RchiOBHm_Chr5g0076491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003284
Physical Location & Seq
Reverse (-)
82144190 .. 82144696
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35114

Sequence Viewer

Length: 507 bp
ATGTTCACACCAGGCACCACAAATGACAAGATAATCAAAGGCCCCATGACCATCAGTGCCATGTTCCCCTTCTTCAAAGGGACGGTGTTTGAAAGCGGCATAGACGCCGCGTTTGAGTCAACGAAAAAATATGAAGCTTACCTCTTCAGAGACAAGAAGTATGCTCATATAAACTACGGTTCTGGTAGTGCCCATCTGATCCACCTCCAGCTCATCACTGACGGCTTTCATGGTTTGAGAAACACCATCTTTGCAAGCGGAATCGAGGCAGCGTTTGCTTCGCACAAGACTAACGAGGCATACCTATTCAAAGGAGATTCCTACGCACTCATCAACTTTGCTCCTGGAACCACTAATGACTACATCATCGGTGGCGTCAAGAAGATCCTTCCCAATTGGCCCTCTCTGCGACCCATCTTGCCTCGCAAAAACCGTGGACTTGACGTTCACGATCACTCTAGCCGTGTTGATGATGGTGACCGTGGCCAAGATCATGATGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

168

Amino Acids

18.7

Weight (kDa)

7.1

Isoelectric Point (pI)

23.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccII CGCG 1 cut(s) 110
AciI CCGC 3 cut(s) 96, 108, 258
AclWI GGATC 2 cut(s) 193, 379
AcoI YGGCCR 1 cut(s) 484
AcuI CTGAAG 1 cut(s) 130
AcyI GRCGYC 2 cut(s) 105, 375
AgsI TTSAA 3 cut(s) 76, 92, 310
AjnI CCWGG 2 cut(s) 10, 343
AloI GAACNNNNNNTCC 2 cut(s) 429, 461
AluBI AGCT 2 cut(s) 137, 211
AluI AGCT 2 cut(s) 137, 211
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 193, 379
AoxI GGCC 3 cut(s) 40, 398, 484
ApeKI GCWGC 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspS9I GGNCC 2 cut(s) 41, 399
AsuHPI GGTGA 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 486
BanI GGYRCC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 281
BccI CCATC 5 cut(s) 59, 201, 254, 422, 467
BceAI ACGGC 2 cut(s) 238, 447
BciT130I CCWGG 2 cut(s) 12, 345
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 459
BisI GCNGC 3 cut(s) 97, 108, 270
BlsI GCNGC 3 cut(s) 98, 109, 271
Bme1390I CCNGG 2 cut(s) 12, 345
BmgT120I GGNCC 2 cut(s) 41, 399
BmiI GGNNCC 3 cut(s) 16, 43, 349
BmrFI CCNGG 2 cut(s) 12, 345
BpmI CTGGAG 1 cut(s) 191
BsaHI GRCGYC 2 cut(s) 105, 375
BsaJI CCNNGG 2 cut(s) 433, 481
BseBI CCWGG 2 cut(s) 12, 345
BseDI CCNNGG 2 cut(s) 433, 481
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 3 cut(s) 42, 400, 486
BshNI GGYRCC 1 cut(s) 14
BslFI GGGAC 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 3 cut(s) 42, 400, 486
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 4 cut(s) 198, 384, 451, 490
BspACI CCGC 3 cut(s) 96, 108, 258
BspANI GGCC 3 cut(s) 42, 400, 486
BspFNI CGCG 1 cut(s) 110
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 3 cut(s) 16, 43, 349
BspPI GGATC 2 cut(s) 193, 379
BspT107I GGYRCC 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 433, 481
BssMI GATC 4 cut(s) 198, 384, 451, 490
BssNI GRCGYC 2 cut(s) 105, 375
Bst2UI CCWGG 2 cut(s) 12, 345
Bst4CI ACNGT 4 cut(s) 85, 179, 434, 482
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 2 cut(s) 105, 375
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 256
BstDSI CCRYGG 2 cut(s) 433, 481
BstEII GGTNACC 1 cut(s) 476
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 4 cut(s) 201, 387, 454, 493
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 4 cut(s) 198, 384, 451, 490
BstMWI GCNNNNNNNGC 2 cut(s) 275, 406
BstNI CCWGG 2 cut(s) 12, 345
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 10, 343
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BsuRI GGCC 3 cut(s) 42, 400, 486
BtgI CCRYGG 2 cut(s) 433, 481
BtsIMutI CAGTG 2 cut(s) 61, 216
Cac8I GCNNGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 493
Cfr13I GGNCC 2 cut(s) 41, 399
CseI GACGC 2 cut(s) 113, 364
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 4 cut(s) 46, 61, 230, 494
CviJI RGCY 7 cut(s) 42, 137, 211, 225, 400, 462, 486
CviKI_1 RGCY 7 cut(s) 42, 137, 211, 225, 400, 462, 486
DpnI GATC 4 cut(s) 200, 386, 453, 492
DpnII GATC 4 cut(s) 198, 384, 451, 490
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 130
Eco91I GGTNACC 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 10, 343
FaeI CATG 4 cut(s) 49, 64, 233, 497
FaqI GGGAC 1 cut(s) 94
FatI CATG 4 cut(s) 45, 60, 229, 493
Fnu4HI GCNGC 3 cut(s) 97, 108, 270
Fsp4HI GCNGC 3 cut(s) 97, 108, 270
FspBI CTAG 1 cut(s) 459
GluI GCNGC 3 cut(s) 97, 108, 270
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 3 cut(s) 42, 400, 486
HgaI GACGC 2 cut(s) 113, 364
Hin1I GRCGYC 2 cut(s) 105, 375
Hin1II CATG 4 cut(s) 49, 64, 233, 497
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 3 cut(s) 116, 261, 317
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 4 cut(s) 6, 120, 437, 448
Hpy188I TCNGA 2 cut(s) 149, 198
Hpy188III TCNNGA 3 cut(s) 379, 449, 494
Hpy8I GTNNAC 4 cut(s) 6, 120, 437, 448
HpyAV CCTTC 2 cut(s) 79, 398
HpyCH4III ACNGT 4 cut(s) 85, 179, 434, 482
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 406
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 2 cut(s) 105, 375
Hsp92II CATG 4 cut(s) 49, 64, 233, 497
Kzo9I GATC 4 cut(s) 198, 384, 451, 490
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 5 cut(s) 24, 168, 221, 330, 357
Lsp1109I GCAGC 1 cut(s) 281
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 476
MalI GATC 4 cut(s) 200, 386, 453, 492
MboI GATC 4 cut(s) 198, 384, 451, 490
MboII GAAGA 3 cut(s) 64, 136, 394
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 193
MlsI TGGCCA 1 cut(s) 486
MluCI AATT 1 cut(s) 394
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 6 cut(s) 152, 215, 259, 289, 412, 432
Mox20I TGGCCA 1 cut(s) 486
MscI TGGCCA 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 486
MspR9I CCNGG 2 cut(s) 12, 345
MunI CAATTG 1 cut(s) 394
MvaI CCWGG 2 cut(s) 12, 345
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 275, 406
NdeII GATC 4 cut(s) 198, 384, 451, 490
NlaIII CATG 4 cut(s) 49, 64, 233, 497
NlaIV GGNNCC 3 cut(s) 16, 43, 349
NmuCI GTSAC 1 cut(s) 476
PagI TCATGA 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PfeI GAWTC 2 cut(s) 261, 317
PfoI TCCNGGA 1 cut(s) 343
PkrI GCNGC 3 cut(s) 98, 109, 271
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 10, 343
PspEI GGTNACC 1 cut(s) 476
PspGI CCWGG 2 cut(s) 10, 343
PspN4I GGNNCC 3 cut(s) 16, 43, 349
PspPI GGNCC 2 cut(s) 41, 399
PsuI RGATCY 1 cut(s) 384
SatI GCNGC 3 cut(s) 97, 108, 270
Sau3AI GATC 4 cut(s) 198, 384, 451, 490
Sau96I GGNCC 2 cut(s) 41, 399
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 12, 345
SduI GDGCHC 1 cut(s) 193
SetI ASST 6 cut(s) 139, 144, 207, 213, 306, 447
Sse9I AATT 1 cut(s) 394
SsiI CCGC 3 cut(s) 96, 108, 258
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 2 cut(s) 10, 343
TaaI ACNGT 4 cut(s) 85, 179, 434, 482
TaiI ACGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 394
TauI GCSGC 2 cut(s) 99, 110
TfiI GAWTC 2 cut(s) 261, 317
TscAI CASTG 2 cut(s) 61, 223
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 147, 218
TspRI CASTG 2 cut(s) 61, 223
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.