Rroxscaffold_1G00005330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003284
Physical Location & Seq
Forward (+)
7290025 .. 7290522
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005330.1

Sequence Viewer

Length: 498 bp
ATGACCACCCGTGCCATGTTCCCCTTCTTCAAAGGGACGGTGTTTGAAAGCGGCATAGACGCCGCGTTTGAGTCAACGAGAAAATATGAAGCTTACCTCTTCAAAGACAACCAGTACGCTCGTATAAACTACGGTTCTGATTCCACTACTCCCGGCCACAAGACCACCTCCACTATCACCACTGTCAACTTTCCTAGTTTGAAAAACACCATCTTTGAAAGTGGAATTGATGCAGCGTTTGCTTCGCACAAGACTCATCAAGCTTACCTATTCAAAGGAGATACCTACACACGCATCAACTTTGCTCCTGGCACCGTAGATGACTACATCATCGGTGGCATCAAGAAGATCCTTCCCAATTGGCCCTCTCTACAACCCTACTTGCCTTGCAAAAACTGTGGACTTGACGTTCATAGTCACACCAGCCCCCGTGTTAATGATGATGACCATGATAAATTAATTTGGGATTCACATCCAAAATCAATTGACAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

165

Amino Acids

18.52

Weight (kDa)

6.64

Isoelectric Point (pI)

18.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hemopexin PF00045 19 - 51 2.6e-06 Hemopexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 1 cut(s) 65
AciI CCGC 2 cut(s) 51, 63
AclWI GGATC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 6 cut(s) 31, 47, 103, 202, 218, 274
AjnI CCWGG 1 cut(s) 307
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 2 cut(s) 92, 263
AluI AGCT 2 cut(s) 92, 263
AlwI GGATC 1 cut(s) 343
AoxI GGCC 2 cut(s) 154, 362
ApeKI GCWGC 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AseI ATTAAT 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 309
BcnI CCSGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 195
BisI GCNGC 3 cut(s) 52, 63, 234
BlsI GCNGC 3 cut(s) 53, 64, 235
Bme1390I CCNGG 2 cut(s) 153, 309
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 153, 309
BmsI GCATC 3 cut(s) 220, 303, 348
BpuMI CCSGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 472
BseJI GATNNNNATC 1 cut(s) 471
BseNI ACTGG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 156, 364
BshNI GGYRCC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 2 cut(s) 156, 364
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 2 cut(s) 51, 63
BspANI GGCC 2 cut(s) 156, 364
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 112
BssMI GATC 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 5 cut(s) 40, 134, 184, 316, 398
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 472
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 1 cut(s) 351
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 151, 307
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BsuRI GGCC 2 cut(s) 156, 364
BtsCI GGATG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviAII CATG 2 cut(s) 16, 449
CviJI RGCY 5 cut(s) 92, 156, 263, 364, 426
CviKI_1 RGCY 5 cut(s) 92, 156, 263, 364, 426
CviQI GTAC 1 cut(s) 115
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 307
FaeI CATG 2 cut(s) 19, 452
FaiI YATR 6 cut(s) 17, 56, 87, 125, 414, 450
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 15, 448
Fnu4HI GCNGC 3 cut(s) 52, 63, 234
FokI GGATG 1 cut(s) 459
Fsp4HI GCNGC 3 cut(s) 52, 63, 234
FspBI CTAG 1 cut(s) 195
GluI GCNGC 3 cut(s) 52, 63, 234
HaeIII GGCC 2 cut(s) 156, 364
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 2 cut(s) 19, 452
HincII GTYRAC 2 cut(s) 75, 187
HindII GTYRAC 2 cut(s) 75, 187
HindIII AAGCTT 2 cut(s) 90, 261
HinfI GANTC 4 cut(s) 71, 140, 253, 467
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 3 cut(s) 75, 187, 401
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 343
Hpy8I GTNNAC 3 cut(s) 75, 187, 401
HpyAV CCTTC 2 cut(s) 34, 362
HpyCH4III ACNGT 5 cut(s) 40, 134, 184, 316, 398
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 2 cut(s) 233, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 2 cut(s) 19, 452
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 5 cut(s) 125, 166, 294, 321, 436
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 3 cut(s) 220, 303, 348
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 416
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 3 cut(s) 19, 91, 358
MfeI CAATTG 2 cut(s) 358, 483
MflI RGATCY 1 cut(s) 348
MluCI AATT 5 cut(s) 225, 358, 455, 459, 483
MlyI GAGTC 2 cut(s) 80, 247
MnlI CCTC 3 cut(s) 107, 178, 376
MseI TTAA 2 cut(s) 435, 458
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 153, 309
MunI CAATTG 2 cut(s) 358, 483
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 1 cut(s) 153
NdeII GATC 1 cut(s) 348
NlaIII CATG 2 cut(s) 19, 452
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 416
PfeI GAWTC 2 cut(s) 140, 467
PkrI GCNGC 3 cut(s) 53, 64, 235
PleI GAGTC 2 cut(s) 79, 247
PpsI GAGTC 2 cut(s) 79, 247
PshBI ATTAAT 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 363
PsuI RGATCY 1 cut(s) 348
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 435, 458
SatI GCNGC 3 cut(s) 52, 63, 234
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 2 cut(s) 80, 247
ScrFI CCNGG 2 cut(s) 153, 309
SetI ASST 7 cut(s) 94, 99, 170, 265, 270, 287, 411
SfaNI GCATC 3 cut(s) 220, 303, 348
Sse9I AATT 5 cut(s) 225, 358, 455, 459, 483
SsiI CCGC 2 cut(s) 51, 63
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 151, 307
TaaI ACNGT 5 cut(s) 40, 134, 184, 316, 398
TaiI ACGT 1 cut(s) 411
TasI AATT 5 cut(s) 225, 358, 455, 459, 483
TauI GCSGC 2 cut(s) 54, 65
TfiI GAWTC 2 cut(s) 140, 467
Tru1I TTAA 2 cut(s) 435, 458
Tru9I TTAA 2 cut(s) 435, 458
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 102, 401
TspRI CASTG 1 cut(s) 187
VspI ATTAAT 1 cut(s) 458
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.