Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000369.1

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Forward (+)

28606 .. 28911

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000369.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgtcgatcccacccaattcaccatggagaggatgcgcagcaaatttccgccaacctgtcagtgaacgtgcagctcagtctttggtggaaactgtttataactttaattgtcttgttccaaatccccctctggctgacatcgagtatagaagcagcagtagagaagaagacatactccgccatgtgttccgctgggatcttaccccctatcaggaggtgtttcagaatggtttccaagcgaggcgtcaagaaaacactaccaatgaagtctacttcaatctggatcaggagcggatccagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

101

Amino Acids

11.85

Weight (kDa)

5.07

Isoelectric Point (pI)

69.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
Acc16I	TGCGCA	1 cut(s)	37
AccBSI	CCGCTC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	4 cut(s)	49, 178, 190, 292
AclWI	GGATC	4 cut(s)	204, 289, 291, 302
AcsI	RAATTY	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	29, 211
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AlwI	GGATC	4 cut(s)	204, 289, 291, 302
ApeKI	GCWGC	3 cut(s)	38, 71, 153
ApoI	RAATTY	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	294
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	50, 83, 165
BciT130I	CCWGG	1 cut(s)	299
BisI	GCNGC	3 cut(s)	39, 72, 154
BlsI	GCNGC	3 cut(s)	40, 73, 155
Bme1390I	CCNGG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	23, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 211
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	23, 298
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	29, 211
BseMII	CTCAG	1 cut(s)	89
BseXI	GCAGC	3 cut(s)	50, 83, 165
BseYI	CCCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	29, 211
Bsp143I	GATC	4 cut(s)	6, 196, 283, 294
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	4 cut(s)	49, 178, 190, 292
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	4 cut(s)	204, 289, 291, 302
BsrBI	CCGCTC	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	23, 298
BssMI	GATC	4 cut(s)	6, 196, 283, 294
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	4 cut(s)	9, 199, 286, 297
BstMBI	GATC	4 cut(s)	6, 196, 283, 294
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	50, 83, 165
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	2 cut(s)	196, 294
BstYI	RGATCY	2 cut(s)	196, 294
BtgI	CCRYGG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	38
CseI	GACGC	1 cut(s)	233
CviAII	CATG	2 cut(s)	24, 182
CviJI	RGCY	2 cut(s)	74, 134
CviKI_1	RGCY	2 cut(s)	74, 134
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	4 cut(s)	8, 198, 285, 296
DpnII	GATC	4 cut(s)	6, 196, 283, 294
EciI	GGCGGA	2 cut(s)	38, 167
Eco130I	CCWWGG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	2 cut(s)	27, 185
FaiI	YATR	5 cut(s)	25, 99, 147, 173, 183
FatI	CATG	2 cut(s)	23, 181
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	39, 72, 154
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	39, 72, 154
FspI	TGCGCA	1 cut(s)	37
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	3 cut(s)	39, 72, 154
GsaI	CCCAGC	1 cut(s)	196
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	27, 185
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	65, 271
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	4 cut(s)	212, 248, 281, 287
Hpy8I	GTNNAC	2 cut(s)	65, 271
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	27, 185
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	6, 196, 283, 294
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	7 cut(s)	69, 116, 178, 197, 266, 272, 284
Lsp1109I	GCAGC	3 cut(s)	50, 83, 165
LweI	GCATC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	67
MalI	GATC	4 cut(s)	8, 198, 285, 296
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	4 cut(s)	6, 196, 283, 294
MboII	GAAGA	2 cut(s)	176, 179
MflI	RGATCY	2 cut(s)	196, 294
MluCI	AATT	3 cut(s)	16, 43, 106
MnlI	CCTC	4 cut(s)	23, 138, 208, 234
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	4 cut(s)	6, 196, 283, 294
NlaIII	CATG	2 cut(s)	27, 185
NlaIV	GGNNCC	1 cut(s)	296
NsbI	TGCGCA	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	40, 73, 155
PsiI	TTATAA	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	196, 294
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	39, 72, 154
Sau3AI	GATC	4 cut(s)	6, 196, 283, 294
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	4 cut(s)	58, 70, 76, 219
SfaNI	GCATC	1 cut(s)	23
Sse9I	AATT	3 cut(s)	16, 43, 106
SsiI	CCGC	4 cut(s)	49, 178, 190, 292
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	5, 141
TasI	AATT	3 cut(s)	16, 43, 106
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	3 cut(s)	38, 71, 153
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.