RchiOBHm_Chr5g0076681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003284
Physical Location & Seq
Reverse (-)
82297420 .. 82299056
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35133

Sequence Viewer

Length: 1554 bp
ATGTCGATCCCGCCGAATTCACCATGGAGAGGATGTGCAGCAAACTACCCTCAACCTGTCAATGAAGTTGTCGAGCTTGCAGCTCAGTCTTTGGTAGAAACTGTTTATTACTTTAATTGCCGTATTGCAGATTCCCCGCTGGCTGACATCGAGTATAGAAGCAGTAGTGGAGAAGAAGACATACTCCGCCATGTGTTCCGCTGGGATCTTACCCCCTATCATGAGGTGTTTCAGAATGGCTTCGAAGTGAGGCGCCAAGAAAACACTACCAACCAAGTCTACTACAATCTGGAACATTACGTCCATCATGGCGGTAGGCCTCTTGATTCCCGCCGACCCGCCACCCACGCCTTTGTTAGCACCACCCTTAACAGCGGTTGGCATCCCACCGTCACCAAGACTGTGGAGGAAGTATATCGCTATGAGATATATGCTCCCGGTGGCATTTGGGTTGCTGAGACTCTTGGTGACAGTTACCAGTACCCGGCCCAAGATGAGGTTTGCTTTGTTGCTGGAGTTGCCCCACAATACATTCGCTCTGTCCAACATTTCAGGCTTGTTCGTAATGGAAGATACACAAGACGGGAGAGACTTGATCATCAAATCATACTGAATGGGAACTACAATCCACAATCGCATCCATACCGGCAGCTCAACATTCGGAGGCCAGTATTTTACTACGTGGATGAAAATGGTACGAGGCAGCTTCTGAACTGTAGCACTTGGGAAGCCCCTGCAATCTCCAATCGAGAGAAACGATCAGCCGATAACTCTGACACCACCGACTGTGAGAGCTACATAGATGCTGGATTCCGTTCATCAGAGGACGATCAAGCCTATCTATTCATGAACAATGAGTATGTGCTAATGAACTATGCTCCGGGCAGCACAAACAACAAGGTATTGAACGGACCGCTTCTTATCTGCTATGGGTTTCCATCCCTCTCGGGCACAACCTTTGCAGAACATGGTATAGACTGTGCTTTCGGGTCTCATGATCGAGATGAAGCCTTTATCTTCTCTGTGAATCTTTGTGCACACATTAACTTCGCACCAGGCACCACAAATAACAAGATAATCAAAGGCCCCATGACCATCAGTGCCATGTTCCCCTTCTTCAAATTGACTGTGTTTTCAACCGGCATAGATGCTGCGTTTGAGGCAACAACAAAATATGAAGCTTACCTCTTCAAAGACAACCAGTATGCTCTTATAAACTACCGTTCTGGTAGTGCCCACCTCATCCACCGCCAGCTCATCACTGACGGCTTTCGTGGTTTGAGAAACACCATCTTTGCAAGTGGAATCGAGGCAGCATTTGCTTCGCACAGGACTAATGAGGCATACCTATTCAAAGGAGATTCCTACGCACTCATCAACTTTGCTCCTGCCACCACTAATGACTACATCATTGGTGGCATCAAGAAGATCCTTCCCAATTGGCCTTCTCTGCAACCGATCTTGCCTCGCAAAAATCGTGGACTTGACGTTCACAACCCATCTAGCCCTGGTGTTGATGATGCTGGCCGTGACCAAGATCATGATGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

517

Amino Acids

58.64

Weight (kDa)

5.84

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scabin-like PF22596 66 - 186 1.7e-26 Scabin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1214
AccB1I GGYRCC 2 cut(s) 252, 1058
AccI GTMKAC 1 cut(s) 279
AclWI GGATC 2 cut(s) 213, 1423
AcoI YGGCCR 1 cut(s) 1525
AcsI RAATTY 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 2 cut(s) 482, 697
AfiI CCNNNNNNNGG 3 cut(s) 29, 484, 496
AgsI TTSAA 5 cut(s) 907, 1120, 1137, 1192, 1354
AjnI CCWGG 2 cut(s) 1054, 1507
AloI GAACNNNNNNTCC 4 cut(s) 285, 317, 1473, 1505
AluBI AGCT 7 cut(s) 76, 83, 652, 706, 795, 1181, 1255
AluI AGCT 7 cut(s) 76, 83, 652, 706, 795, 1181, 1255
Alw21I GWGCWC 1 cut(s) 1039
Alw26I GTCTC 3 cut(s) 452, 583, 996
Alw44I GTGCAC 1 cut(s) 1035
AlwI GGATC 2 cut(s) 213, 1423
AlwNI CAGNNNCTG 1 cut(s) 709
Ama87I CYCGRG 1 cut(s) 946
AoxI GGCC 6 cut(s) 317, 486, 665, 1084, 1442, 1525
ApaLI GTGCAC 1 cut(s) 1035
ApeKI GCWGC 7 cut(s) 38, 80, 649, 703, 885, 1151, 1313
ApoI RAATTY 1 cut(s) 16
ArsI GACNNNNNNTTYG 2 cut(s) 968, 1000
Asp700I GAANNNNTTC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 3 cut(s) 487, 911, 1085
AsuC2I CCSGG 3 cut(s) 438, 485, 882
AsuHPI GGTGA 3 cut(s) 12, 385, 479
AsuII TTCGAA 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 946
AvaII GGWCC 1 cut(s) 911
BaeGI GKGCMC 3 cut(s) 953, 1039, 1237
BanI GGYRCC 2 cut(s) 252, 1058
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 1039
BbvI GCAGC 7 cut(s) 50, 92, 661, 715, 897, 1138, 1325
BccI CCATC 5 cut(s) 312, 946, 1103, 1298, 1507
BceAI ACGGC 3 cut(s) 105, 1282, 1512
BcgI CGANNNNNNTGC 2 cut(s) 1305, 1339
BciT130I CCWGG 2 cut(s) 1056, 1509
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 3 cut(s) 438, 485, 882
BcoDI GTCTC 3 cut(s) 452, 583, 996
BfaI CTAG 1 cut(s) 1503
BfmI CTRYAG 1 cut(s) 715
BfoI RGCGCY 1 cut(s) 256
BisI GCNGC 7 cut(s) 39, 81, 650, 704, 886, 1152, 1314
BlsI GCNGC 7 cut(s) 40, 82, 651, 705, 887, 1153, 1315
Bme1390I CCNGG 5 cut(s) 438, 485, 882, 1056, 1509
Bme18I GGWCC 1 cut(s) 911
BmeT110I CYCGRG 1 cut(s) 946
BmgT120I GGNCC 3 cut(s) 487, 911, 1085
BmiI GGNNCC 3 cut(s) 254, 1060, 1087
BmrFI CCNGG 5 cut(s) 438, 485, 882, 1056, 1509
BmsI GCATC 6 cut(s) 391, 646, 793, 1138, 1428, 1510
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 243
BpuMI CCSGG 3 cut(s) 438, 485, 882
BsaAI YACGTR 1 cut(s) 682
BsaHI GRCGYC 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 996
BsaJI CCNNGG 2 cut(s) 23, 1507
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 484, 496
Bse118I RCCGGY 2 cut(s) 645, 1139
Bse1I ACTGG 3 cut(s) 478, 668, 1201
BseBI CCWGG 2 cut(s) 1056, 1509
BseDI CCNNGG 2 cut(s) 23, 1507
BseGI GGATG 6 cut(s) 38, 382, 637, 691, 938, 1242
BseLI CCNNNNNNNGG 3 cut(s) 29, 484, 496
BseMII CTCAG 2 cut(s) 98, 447
BseNI ACTGG 3 cut(s) 478, 668, 1201
BseSI GKGCMC 3 cut(s) 953, 1039, 1237
BseXI GCAGC 7 cut(s) 50, 92, 661, 715, 897, 1138, 1325
BseYI CCCAGC 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 6 cut(s) 319, 488, 667, 1086, 1444, 1527
BshNI GGYRCC 2 cut(s) 252, 1058
BsiHKAI GWGCWC 1 cut(s) 1039
BsiHKCI CYCGRG 1 cut(s) 946
BsiSI CCGG 5 cut(s) 438, 485, 646, 881, 1140
BslI CCNNNNNNNGG 3 cut(s) 29, 484, 496
BsmAI GTCTC 3 cut(s) 452, 583, 996
BsnI GGCC 6 cut(s) 319, 488, 667, 1086, 1444, 1527
Bso31I GGTCTC 1 cut(s) 996
BsoBI CYCGRG 1 cut(s) 946
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 3 cut(s) 953, 1039, 1237
Bsp143I GATC 9 cut(s) 6, 205, 595, 758, 829, 997, 1428, 1458, 1537
Bsp19I CCATGG 1 cut(s) 23
BspANI GGCC 6 cut(s) 319, 488, 667, 1086, 1444, 1527
BspCNI CTCAG 2 cut(s) 97, 448
BspHI TCATGA 4 cut(s) 220, 846, 994, 1540
BspLI GGNNCC 3 cut(s) 254, 1060, 1087
BspPI GGATC 2 cut(s) 213, 1423
BspT104I TTCGAA 1 cut(s) 243
BspT107I GGYRCC 2 cut(s) 252, 1058
BspTNI GGTCTC 1 cut(s) 996
BsrFI RCCGGY 2 cut(s) 645, 1139
BsrI ACTGG 3 cut(s) 478, 668, 1201
BssAI RCCGGY 2 cut(s) 645, 1139
BssECI CCNNGG 2 cut(s) 23, 1507
BssMI GATC 9 cut(s) 6, 205, 595, 758, 829, 997, 1428, 1458, 1537
BssNI GRCGYC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 2 cut(s) 1056, 1509
Bst4CI ACNGT 9 cut(s) 103, 391, 403, 473, 716, 788, 980, 1129, 1223
Bst6I CTCTTC 1 cut(s) 1193
BstACI GRCGYC 1 cut(s) 253
BstAPI GCANNNNNTGC 1 cut(s) 1319
BstBAI YACGTR 1 cut(s) 682
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 4 cut(s) 78, 141, 1253, 1525
BstDEI CTNAG 2 cut(s) 84, 456
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 6 cut(s) 38, 382, 637, 691, 938, 1242
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 9 cut(s) 9, 208, 598, 761, 832, 1000, 1431, 1461, 1540
BstMAI GTCTC 3 cut(s) 452, 583, 996
BstMBI GATC 9 cut(s) 6, 205, 595, 758, 829, 997, 1428, 1458, 1537
BstMWI GCNNNNNNNGC 5 cut(s) 347, 518, 1160, 1319, 1450
BstNI CCWGG 2 cut(s) 1056, 1509
BstSCI CCNGG 5 cut(s) 436, 483, 880, 1054, 1507
BstSFI CTRYAG 1 cut(s) 715
BstSLI GKGCMC 3 cut(s) 953, 1039, 1237
BstV1I GCAGC 7 cut(s) 50, 92, 661, 715, 897, 1138, 1325
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 2 cut(s) 205, 1428
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 2 cut(s) 205, 1428
BsuRI GGCC 6 cut(s) 319, 488, 667, 1086, 1444, 1527
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 6 cut(s) 38, 382, 637, 691, 938, 1242
BtsIMutI CAGTG 2 cut(s) 1105, 1260
Cac8I GCNNGC 4 cut(s) 78, 141, 1253, 1525
CaiI CAGNNNCTG 1 cut(s) 709
CciI TCATGA 4 cut(s) 220, 846, 994, 1540
CfoI GCGC 1 cut(s) 255
Cfr10I RCCGGY 2 cut(s) 645, 1139
Cfr13I GGNCC 3 cut(s) 487, 911, 1085
CpoI CGGWCCG 1 cut(s) 911
Csp6I GTAC 2 cut(s) 481, 696
CspCI CAANNNNNGTGG 2 cut(s) 1459, 1494
CspI CGGWCCG 1 cut(s) 911
CviQI GTAC 2 cut(s) 481, 696
DdeI CTNAG 2 cut(s) 84, 456
DinI GGCGCC 1 cut(s) 254
DpnI GATC 9 cut(s) 8, 207, 597, 760, 831, 999, 1430, 1460, 1539
DpnII GATC 9 cut(s) 6, 205, 595, 758, 829, 997, 1428, 1458, 1537
EaeI YGGCCR 1 cut(s) 1525
Eam1104I CTCTTC 1 cut(s) 1193
EarI CTCTTC 1 cut(s) 1193
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 23
Eco147I AGGCCT 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 911
Eco88I CYCGRG 1 cut(s) 946
EcoO109I RGGNCCY 1 cut(s) 1085
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 1054, 1507
EcoT14I CCWWGG 1 cut(s) 23
EgeI GGCGCC 1 cut(s) 254
EheI GGCGCC 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 23
FauI CCCGC 4 cut(s) 18, 144, 338, 346
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 7 cut(s) 39, 81, 650, 704, 886, 1152, 1314
FokI GGATG 6 cut(s) 45, 369, 624, 698, 925, 1229
Fsp4HI GCNGC 7 cut(s) 39, 81, 650, 704, 886, 1152, 1314
FspBI CTAG 1 cut(s) 1503
GlaI GCGC 1 cut(s) 254
GluI GCNGC 7 cut(s) 39, 81, 650, 704, 886, 1152, 1314
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 6 cut(s) 319, 488, 667, 1086, 1444, 1527
HapII CCGG 5 cut(s) 438, 485, 646, 881, 1140
HhaI GCGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 253
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 1179
HinfI GANTC 7 cut(s) 131, 326, 460, 810, 1027, 1305, 1361
HpaII CCGG 5 cut(s) 438, 485, 646, 881, 1140
HphI GGTGA 3 cut(s) 12, 385, 479
Hpy166II GTNNAC 4 cut(s) 280, 1037, 1481, 1492
Hpy188I TCNGA 5 cut(s) 234, 663, 711, 775, 823
Hpy188III TCNNGA 9 cut(s) 221, 290, 323, 749, 847, 995, 1001, 1423, 1541
Hpy8I GTNNAC 4 cut(s) 280, 1037, 1481, 1492
HpyAV CCTTC 3 cut(s) 1123, 1442, 1455
HpyCH4III ACNGT 9 cut(s) 103, 391, 403, 473, 716, 788, 980, 1129, 1223
HpyCH4IV ACGT 3 cut(s) 300, 681, 1488
HpyCH4V TGCA 8 cut(s) 38, 80, 128, 737, 962, 1037, 1298, 1453
HpyF10VI GCNNNNNNNGC 5 cut(s) 347, 518, 1160, 1319, 1450
HpyF3I CTNAG 2 cut(s) 84, 456
HpySE526I ACGT 3 cut(s) 300, 681, 1488
Hsp92I GRCGYC 1 cut(s) 253
HspAI GCGC 1 cut(s) 253
KasI GGCGCC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 9 cut(s) 6, 205, 595, 758, 829, 997, 1428, 1458, 1537
LmnI GCTCC 3 cut(s) 439, 883, 1390
Lsp1109I GCAGC 7 cut(s) 50, 92, 661, 715, 897, 1138, 1325
LweI GCATC 6 cut(s) 391, 646, 793, 1138, 1428, 1510
MaeI CTAG 1 cut(s) 1503
MaeII ACGT 3 cut(s) 300, 681, 1488
MaeIII GTNAC 4 cut(s) 391, 467, 473, 1529
MalI GATC 9 cut(s) 8, 207, 597, 760, 831, 999, 1430, 1460, 1539
MboI GATC 9 cut(s) 6, 205, 595, 758, 829, 997, 1428, 1458, 1537
MboII GAAGA 7 cut(s) 185, 188, 582, 1009, 1108, 1180, 1438
MfeI CAATTG 1 cut(s) 1438
MflI RGATCY 2 cut(s) 205, 1428
MhlI GDGCHC 3 cut(s) 953, 1039, 1237
MluCI AATT 4 cut(s) 16, 115, 1121, 1438
Mly113I GGCGCC 1 cut(s) 253
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 3 cut(s) 114, 369, 1044
MspA1I CMGCKG 3 cut(s) 139, 201, 375
MspI CCGG 5 cut(s) 438, 485, 646, 881, 1140
MspR9I CCNGG 5 cut(s) 438, 485, 882, 1056, 1509
MunI CAATTG 1 cut(s) 1438
MvaI CCWGG 2 cut(s) 1056, 1509
MwoI GCNNNNNNNGC 5 cut(s) 347, 518, 1160, 1319, 1450
NarI GGCGCC 1 cut(s) 253
NciI CCSGG 3 cut(s) 438, 485, 882
NcoI CCATGG 1 cut(s) 23
NdeII GATC 9 cut(s) 6, 205, 595, 758, 829, 997, 1428, 1458, 1537
NlaIV GGNNCC 3 cut(s) 254, 1060, 1087
NmuCI GTSAC 3 cut(s) 391, 467, 1529
NspV TTCGAA 1 cut(s) 243
PagI TCATGA 4 cut(s) 220, 846, 994, 1540
PceI AGGCCT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 754, 1474
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 6 cut(s) 131, 326, 810, 1027, 1305, 1361
PkrI GCNGC 7 cut(s) 40, 82, 651, 705, 887, 1153, 1315
PleI GAGTC 1 cut(s) 454
PluTI GGCGCC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 682
PsiI TTATAA 1 cut(s) 1214
Psp6I CCWGG 2 cut(s) 1054, 1507
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 2 cut(s) 1054, 1507
PspN4I GGNNCC 3 cut(s) 254, 1060, 1087
PspPI GGNCC 3 cut(s) 487, 911, 1085
PstNI CAGNNNCTG 1 cut(s) 709
PsuI RGATCY 2 cut(s) 205, 1428
RsaI GTAC 2 cut(s) 482, 697
RsaNI GTAC 2 cut(s) 481, 696
Rsr2I CGGWCCG 1 cut(s) 911
RsrII CGGWCCG 1 cut(s) 911
SaqAI TTAA 3 cut(s) 114, 369, 1044
SatI GCNGC 7 cut(s) 39, 81, 650, 704, 886, 1152, 1314
Sau3AI GATC 9 cut(s) 6, 205, 595, 758, 829, 997, 1428, 1458, 1537
Sau96I GGNCC 3 cut(s) 487, 911, 1085
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 5 cut(s) 438, 485, 882, 1056, 1509
SduI GDGCHC 3 cut(s) 953, 1039, 1237
SfaNI GCATC 6 cut(s) 391, 646, 793, 1138, 1428, 1510
SfcI CTRYAG 1 cut(s) 715
SfoI GGCGCC 1 cut(s) 254
SfuI TTCGAA 1 cut(s) 243
SinI GGWCC 1 cut(s) 911
Sse9I AATT 4 cut(s) 16, 115, 1121, 1438
SseBI AGGCCT 1 cut(s) 319
SspDI GGCGCC 1 cut(s) 252
SspMI CTAG 1 cut(s) 1503
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 5 cut(s) 436, 483, 880, 1054, 1507
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 9 cut(s) 103, 391, 403, 473, 716, 788, 980, 1129, 1223
TaiI ACGT 3 cut(s) 303, 684, 1491
TaqI TCGA 7 cut(s) 5, 72, 150, 243, 748, 1000, 1308
TasI AATT 4 cut(s) 16, 115, 1121, 1438
TfiI GAWTC 6 cut(s) 131, 326, 810, 1027, 1305, 1361
Tru1I TTAA 3 cut(s) 114, 369, 1044
Tru9I TTAA 3 cut(s) 114, 369, 1044
TscAI CASTG 2 cut(s) 1105, 1267
TseFI GTSAC 3 cut(s) 391, 467, 1529
TseI GCWGC 7 cut(s) 38, 80, 649, 703, 885, 1151, 1313
Tsp45I GTSAC 3 cut(s) 391, 467, 1529
TspDTI ATGAA 8 cut(s) 78, 702, 807, 835, 863, 884, 1020, 1191
TspGWI ACGGA 2 cut(s) 803, 924
TspRI CASTG 2 cut(s) 1105, 1267
VneI GTGCAC 1 cut(s) 1035
VpaK11BI GGWCC 1 cut(s) 911
XapI RAATTY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.