Rorug05G0448600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003284
Physical Location & Seq
Reverse (-)
62039759 .. 62042142
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0448600.1

Sequence Viewer

Length: 978 bp
ATGGAGGACATGGGTTCTATATGGACTACCTATCAAGAGAGCACTGATGATTTGAACAAGAAGCTTCTTTACACTACCCTTGAGCTTGAAACAATGAAGAATTTAGCAACAGAGAGTCAAGAGAATGTGAAGAATCTACTCAATCTACTAAAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGCTGCACAAGTTCTTCAACAAGATCACTGCTTCTACTCCAATTGACTTACCCAATGTGCAGTTTAATCAAGTAGTCCAGCCCGAAAGTCCGACTTTGATGCCCACAAAAGCAAACTCAAGCATTACTGAATCCAACAGCCTCTCTGAAACTTACAATCCCCAATCACATATCTCTTCTCCTGTTGATTCATTGTTTGATGCAGTCTCTTCTCCTGAGTTTTCCAATATCAACATGGCTGATTCTAGCAACAACATGGGTTTTGTGAAGCAGCCTTTGGTGAAAGAATTTAATGGAAGTACTATTATACCTACTGGTGTAGTAGTCTCTTCTGGTTCAAATATCAAAGCTGATCCAGCTAATGAAATAATTGACAATTTTGTTAGGGGTAGGCCTTTGCCTCAGAAAGGGATGTTATTGCAAGCTGTGATGGATGCTGGTCCATTGCTTCAGACACTTCTCGTTGCAGGTCCTATGCCCCGGTGGCGAAATCCCCCTCCTTTGCAGCCCTTCAAAATCCCACCAGTTTCAATCAAAGGTTGTGAAGCTGCTGTGAGTTTTAACAACCAGAAACAAGTGGCAAGTCCTACCTATGTGGTTCATAAGACACAGAACTTAACATCTTATCCTGAGATGACTCGAGGCTTTTCGCAAACATGTTCAGCTGCCATGTTGAATTTCAACAATGTCAATCCTAATGCTGTTTCATACCTAAACAATTCAAGAATGCCGAGTTCAATTTCCAGTTTTGATCACCAAATCCCAATTGCCAAGCGGCATAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

325

Amino Acids

36.0

Weight (kDa)

6.53

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 13 - 255 6.6e-44 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 644
AciI CCGC 1 cut(s) 961
AclWI GGATC 1 cut(s) 533
AcsI RAATTY 3 cut(s) 100, 473, 862
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 842
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 8 cut(s) 64, 85, 190, 536, 545, 611, 734, 851
AluI AGCT 8 cut(s) 64, 85, 190, 536, 545, 611, 734, 851
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 3 cut(s) 177, 397, 517
AlwI GGATC 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 825
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 5 cut(s) 190, 457, 691, 734, 851
ApoI RAATTY 3 cut(s) 100, 473, 862
AspS9I GGNCC 2 cut(s) 626, 656
AsuC2I CCSGG 1 cut(s) 667
AsuHPI GGTGA 2 cut(s) 478, 932
AvaI CYCGRG 1 cut(s) 825
AvaII GGWCC 2 cut(s) 626, 656
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 5 cut(s) 177, 469, 703, 721, 838
BccI CCATC 1 cut(s) 610
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 3 cut(s) 177, 397, 517
BfaI CTAG 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 644
BglI GCCNNNNNGGC 1 cut(s) 670
BisI GCNGC 6 cut(s) 191, 458, 692, 735, 852, 962
BlsI GCNGC 6 cut(s) 192, 459, 693, 736, 853, 963
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 667
Bme18I GGWCC 2 cut(s) 626, 656
BmeT110I CYCGRG 1 cut(s) 825
BmgT120I GGNCC 2 cut(s) 626, 656
BmrFI CCNGG 1 cut(s) 667
BmsI GCATC 3 cut(s) 276, 376, 610
BpuEI CTTGAG 2 cut(s) 101, 289
BpuMI CCSGG 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 665
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 3 cut(s) 505, 710, 930
Bse3DI GCAATG 1 cut(s) 629
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 2 cut(s) 603, 625
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 3 cut(s) 393, 602, 807
BseNI ACTGG 3 cut(s) 505, 710, 930
BseXI GCAGC 5 cut(s) 177, 469, 703, 721, 838
BsgI GTGCAG 2 cut(s) 176, 266
BshFI GGCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 825
BsiSI CCGG 1 cut(s) 667
BslI CCNNNNNNNGG 1 cut(s) 593
BsmAI GTCTC 3 cut(s) 177, 397, 517
BsmI GAATGC 1 cut(s) 918
BsnI GGCC 1 cut(s) 580
Bso31I GGTCTC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 825
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 210, 538, 937
BspACI CCGC 1 cut(s) 961
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 3 cut(s) 394, 601, 808
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 629
BsrI ACTGG 3 cut(s) 505, 710, 930
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 3 cut(s) 210, 538, 937
Bst6I CTCTTC 3 cut(s) 367, 400, 520
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 402, 588, 816
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 603, 625
BstKTI GATC 3 cut(s) 213, 541, 940
BstMAI GTCTC 3 cut(s) 177, 397, 517
BstMBI GATC 3 cut(s) 210, 538, 937
BstMWI GCNNNNNNNGC 3 cut(s) 542, 670, 967
BstNSI RCATGY 1 cut(s) 846
BstSCI CCNGG 1 cut(s) 665
BstV1I GCAGC 5 cut(s) 177, 469, 703, 721, 838
BsuRI GGCC 1 cut(s) 580
BtsCI GGATG 2 cut(s) 603, 625
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 42, 213
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 1 cut(s) 609
Cfr13I GGNCC 2 cut(s) 626, 656
Csp6I GTAC 1 cut(s) 486
CviAII CATG 5 cut(s) 10, 421, 442, 843, 856
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 3 cut(s) 402, 588, 816
DpnI GATC 3 cut(s) 212, 540, 939
DpnII GATC 3 cut(s) 210, 538, 937
Eam1104I CTCTTC 3 cut(s) 367, 400, 520
EarI CTCTTC 3 cut(s) 367, 400, 520
Eco147I AGGCCT 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 626, 656
Eco57I CTGAAG 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 825
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 656
FaeI CATG 5 cut(s) 13, 424, 445, 846, 859
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 5 cut(s) 9, 420, 441, 842, 855
FbaI TGATCA 1 cut(s) 937
Fnu4HI GCNGC 6 cut(s) 191, 458, 692, 735, 852, 962
FokI GGATG 2 cut(s) 610, 632
Fsp4HI GCNGC 6 cut(s) 191, 458, 692, 735, 852, 962
FspBI CTAG 1 cut(s) 432
GluI GCNGC 6 cut(s) 191, 458, 692, 735, 852, 962
HaeIII GGCC 1 cut(s) 580
HapII CCGG 1 cut(s) 667
Hin1II CATG 5 cut(s) 13, 424, 445, 846, 859
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 6 cut(s) 115, 133, 317, 374, 428, 823
HpaII CCGG 1 cut(s) 667
HphI GGTGA 2 cut(s) 478, 932
Hpy188I TCNGA 4 cut(s) 279, 334, 591, 639
Hpy188III TCNNGA 5 cut(s) 35, 119, 401, 815, 909
HpyAV CCTTC 1 cut(s) 706
HpyCH4V TGCA 7 cut(s) 158, 193, 247, 389, 607, 653, 691
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 670, 967
HpyF3I CTNAG 3 cut(s) 402, 588, 816
Hsp92II CATG 5 cut(s) 13, 424, 445, 846, 859
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 3 cut(s) 210, 538, 937
Lsp1109I GCAGC 5 cut(s) 177, 469, 703, 721, 838
LweI GCATC 3 cut(s) 276, 376, 610
MaeI CTAG 1 cut(s) 432
MalI GATC 3 cut(s) 212, 540, 939
MboI GATC 3 cut(s) 210, 538, 937
MboII GAAGA 6 cut(s) 109, 142, 193, 354, 387, 507
MfeI CAATTG 2 cut(s) 228, 951
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 9 cut(s) 100, 228, 473, 555, 562, 862, 904, 924, 951
MlyI GAGTC 2 cut(s) 124, 817
MmeI TCCRAC 2 cut(s) 302, 345
MnlI CCTC 4 cut(s) 338, 597, 693, 821
MseI TTAA 4 cut(s) 252, 477, 747, 803
MspA1I CMGCKG 2 cut(s) 190, 851
MspI CCGG 1 cut(s) 667
MspR9I CCNGG 1 cut(s) 667
MunI CAATTG 2 cut(s) 228, 951
Mva1269I GAATGC 1 cut(s) 918
MwoI GCNNNNNNNGC 3 cut(s) 542, 670, 967
NciI CCSGG 1 cut(s) 667
NdeII GATC 3 cut(s) 210, 538, 937
NlaIII CATG 5 cut(s) 13, 424, 445, 846, 859
NmeAIII GCCGAG 1 cut(s) 942
NspI RCATGY 1 cut(s) 846
PaeR7I CTCGAG 1 cut(s) 825
PceI AGGCCT 1 cut(s) 580
PciI ACATGT 1 cut(s) 842
PctI GAATGC 1 cut(s) 918
PfeI GAWTC 4 cut(s) 133, 317, 374, 428
PkrI GCNGC 6 cut(s) 192, 459, 693, 736, 853, 963
PleI GAGTC 2 cut(s) 123, 817
PpsI GAGTC 2 cut(s) 123, 817
PpuMI RGGWCCY 1 cut(s) 656
PscI ACATGT 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 656
PspPI GGNCC 2 cut(s) 626, 656
PspPPI RGGWCCY 1 cut(s) 656
PspXI VCTCGAGB 1 cut(s) 825
PvuII CAGCTG 2 cut(s) 190, 851
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SaqAI TTAA 4 cut(s) 252, 477, 747, 803
SatI GCNGC 6 cut(s) 191, 458, 692, 735, 852, 962
Sau3AI GATC 3 cut(s) 210, 538, 937
Sau96I GGNCC 2 cut(s) 626, 656
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 2 cut(s) 124, 817
ScrFI CCNGG 1 cut(s) 667
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 3 cut(s) 276, 376, 610
Sfr274I CTCGAG 1 cut(s) 825
SinI GGWCC 2 cut(s) 626, 656
SlaI CTCGAG 1 cut(s) 825
SmlI CTYRAG 3 cut(s) 80, 304, 825
SmoI CTYRAG 3 cut(s) 80, 304, 825
Sse9I AATT 9 cut(s) 100, 228, 473, 555, 562, 862, 904, 924, 951
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 1 cut(s) 961
SspMI CTAG 1 cut(s) 432
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 1 cut(s) 665
TaqI TCGA 1 cut(s) 826
TasI AATT 9 cut(s) 100, 228, 473, 555, 562, 862, 904, 924, 951
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 964
TfiI GAWTC 4 cut(s) 133, 317, 374, 428
Tru1I TTAA 4 cut(s) 252, 477, 747, 803
Tru9I TTAA 4 cut(s) 252, 477, 747, 803
TscAI CASTG 2 cut(s) 49, 220
TseI GCWGC 5 cut(s) 190, 457, 691, 734, 851
TspDTI ATGAA 6 cut(s) 110, 189, 366, 564, 776, 882
TspRI CASTG 2 cut(s) 49, 220
VpaK11BI GGWCC 2 cut(s) 626, 656
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 3 cut(s) 100, 473, 862
XceI RCATGY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XhoI CTCGAG 1 cut(s) 825
XspI CTAG 1 cut(s) 432
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.