Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Reverse (-)

82802678 .. 82803145

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG536800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACCATCACTGCCATGTTCCCCTTCTTGAAAAATACGGAGTTTGAAAGCGGCATAGACGCCGCGTTTGAGTCAACGGAAGACTATGAAGCTTACCTCTTCAAAGGCAACCAGTATGCTCTTATATATTTCGATTCTGATGATCCCCACCTCATCCACGTCAATGTCATCAGTGACGGCTTCCCTAGTTTGAAAAACACCATCTTTGAAAGTGGAATTGATGCAGCGTTTGCTTCGCACAGGACTAACGAGGCTTACCTATTCAAAGGAGATTCCTACGCACTCATCAACTTTGCTCCTGGAACCACTGATGACTACATCATCGGTGGCGTCAAGAAGATCCTTCCCAATTGGCCCTCTCTGCAACCCATCTTGCCTCGCAAAAACCGTGGACTTGACGTTCATCACAATGACACTAGCCCTGGTGTTGATGATGATGACCGTGACCAAGATCATGATGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

155

Amino Acids

17.42

Weight (kDa)

4.4

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	51, 63
AclWI	GGATC	2 cut(s)	137, 334
AcyI	GRCGYC	2 cut(s)	60, 330
AgsI	TTSAA	6 cut(s)	31, 47, 103, 193, 209, 265
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	298, 421
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	2 cut(s)	137, 334
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspS9I	GGNCC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	3 cut(s)	14, 209, 377
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	2 cut(s)	300, 423
BfaI	CTAG	2 cut(s)	186, 417
BisI	GCNGC	3 cut(s)	52, 63, 225
BlsI	GCNGC	3 cut(s)	53, 64, 226
Bme1390I	CCNGG	2 cut(s)	300, 423
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	300, 423
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	87
BsaHI	GRCGYC	2 cut(s)	60, 330
BsaJI	CCNNGG	2 cut(s)	388, 421
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	300, 423
BseDI	CCNNGG	2 cut(s)	388, 421
BseGI	GGATG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	142, 339, 451
BspACI	CCGC	2 cut(s)	51, 63
BspANI	GGCC	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	137, 334
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	388, 421
BssMI	GATC	3 cut(s)	142, 339, 451
BssNI	GRCGYC	2 cut(s)	60, 330
Bst2UI	CCWGG	2 cut(s)	300, 423
Bst4CI	ACNGT	2 cut(s)	389, 443
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	60, 330
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	3 cut(s)	145, 342, 454
BstMBI	GATC	3 cut(s)	142, 339, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 361
BstNI	CCWGG	2 cut(s)	300, 423
BstSCI	CCNGG	2 cut(s)	298, 421
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	388
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	3 cut(s)	9, 178, 306
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	354
CseI	GACGC	2 cut(s)	68, 319
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	2 cut(s)	16, 455
CviJI	RGCY	5 cut(s)	92, 180, 254, 355, 420
CviKI_1	RGCY	5 cut(s)	92, 180, 254, 355, 420
DpnI	GATC	3 cut(s)	144, 341, 453
DpnII	GATC	3 cut(s)	142, 339, 451
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	298, 421
FaeI	CATG	2 cut(s)	19, 458
FaiI	YATR	7 cut(s)	17, 56, 87, 117, 125, 127, 456
FatI	CATG	2 cut(s)	15, 454
Fnu4HI	GCNGC	3 cut(s)	52, 63, 225
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	52, 63, 225
FspBI	CTAG	2 cut(s)	186, 417
GluI	GCNGC	3 cut(s)	52, 63, 225
HaeIII	GGCC	1 cut(s)	355
HgaI	GACGC	2 cut(s)	68, 319
Hin1I	GRCGYC	2 cut(s)	60, 330
Hin1II	CATG	2 cut(s)	19, 458
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	71, 134, 272
Hpy166II	GTNNAC	2 cut(s)	75, 392
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	3 cut(s)	28, 334, 455
Hpy8I	GTNNAC	2 cut(s)	75, 392
HpyAV	CCTTC	2 cut(s)	34, 353
HpyCH4III	ACNGT	2 cut(s)	389, 443
HpyCH4IV	ACGT	2 cut(s)	159, 399
HpyCH4V	TGCA	2 cut(s)	224, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 361
HpySE526I	ACGT	2 cut(s)	159, 399
Hsp92I	GRCGYC	2 cut(s)	60, 330
Hsp92II	CATG	2 cut(s)	19, 458
Kzo9I	GATC	3 cut(s)	142, 339, 451
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	6 cut(s)	125, 226, 285, 312, 408, 435
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	186, 417
MaeII	ACGT	2 cut(s)	159, 399
MaeIII	GTNAC	2 cut(s)	173, 443
MalI	GATC	3 cut(s)	144, 341, 453
MboI	GATC	3 cut(s)	142, 339, 451
MboII	GAAGA	3 cut(s)	91, 92, 349
MfeI	CAATTG	1 cut(s)	349
MflI	RGATCY	1 cut(s)	339
MluCI	AATT	2 cut(s)	216, 349
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	107, 161, 244, 367, 387
MslI	CAYNNNNRTG	3 cut(s)	14, 162, 408
MspR9I	CCNGG	2 cut(s)	300, 423
MunI	CAATTG	1 cut(s)	349
MvaI	CCWGG	2 cut(s)	300, 423
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	230, 361
NdeII	GATC	3 cut(s)	142, 339, 451
NlaIII	CATG	2 cut(s)	19, 458
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	173, 443
PagI	TCATGA	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	134, 272
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	53, 64, 226
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	298, 421
PspGI	CCWGG	2 cut(s)	298, 421
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	339
RseI	CAYNNNNRTG	3 cut(s)	14, 162, 408
SatI	GCNGC	3 cut(s)	52, 63, 225
Sau3AI	GATC	3 cut(s)	142, 339, 451
Sau96I	GGNCC	1 cut(s)	354
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	300, 423
SetI	ASST	6 cut(s)	94, 99, 153, 162, 261, 402
SfaNI	GCATC	1 cut(s)	211
SmiMI	CAYNNNNRTG	3 cut(s)	14, 162, 408
Sse9I	AATT	2 cut(s)	216, 349
SsiI	CCGC	2 cut(s)	51, 63
SspMI	CTAG	2 cut(s)	186, 417
StyD4I	CCNGG	2 cut(s)	298, 421
TaaI	ACNGT	2 cut(s)	389, 443
TaiI	ACGT	2 cut(s)	162, 402
TaqI	TCGA	1 cut(s)	132
TasI	AATT	2 cut(s)	216, 349
TauI	GCSGC	2 cut(s)	54, 65
TfiI	GAWTC	2 cut(s)	134, 272
TscAI	CASTG	3 cut(s)	16, 178, 313
TseFI	GTSAC	2 cut(s)	173, 443
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	2 cut(s)	173, 443
TspDTI	ATGAA	2 cut(s)	102, 392
TspGWI	ACGGA	2 cut(s)	53, 92
TspRI	CASTG	3 cut(s)	16, 178, 313
XspI	CTAG	2 cut(s)	186, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.