Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Reverse (-)

82803787 .. 82804674

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG537000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCGTATATCCCGGCGGATTCACAATTGAGAGGATGCGCAGCACACTTCGCTCAACCTGTCGATGACAACGACCGGCTTGCAGCTGAAGAATTGAGAAATTCTGTTTATCACTTCAATTGCCGTGTTGGAGATCTCCCTCTGGCTGACATTGAGTACAGAAGCAGCAGTGGAGAAGGAGACATACTCCGCCATGTCTTCCACTGGGATCGTACTCCCTATCGAGAGGTGTTTCAGAATGGATTCCAAGTGAGGCGTCAAGATGACACTCGTGATGAGGACTACTTCAATCTGGATCAATTTGTCCATTATTCCGGTAGGCCTCTTGATTCCCGCCGATCCGCCAACCACGCATTCCTTAGCACCACCCTTAACGGCGATTGGCGTCCCACCGTCCGTGAGACTCTGGAGGAAGTATATCGCTATGAGATATATGCTCCTGGTGGCATTTGGGTTGCTGAGACTCTTGGTGATCAGTACCGTTATCGTTCTCAAGACGAGGTCTGCTTTGTTGCTGGCATTGCCCGTCAATACATTCGCGCTGCCCAACGTTTCAGGATTGTTTGGGACGGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

192

Amino Acids

22.55

Weight (kDa)

5.51

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Scabin-like	PF22596	67 - 185	7.7e-25	Scabin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	40
AccII	CGCG	1 cut(s)	540
AciI	CCGC	4 cut(s)	17, 190, 334, 342
AclI	AACGTT	1 cut(s)	550
AclWI	GGATC	3 cut(s)	216, 303, 333
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	108
AcyI	GRCGYC	2 cut(s)	256, 385
AfaI	GTAC	3 cut(s)	158, 214, 479
AgsI	TTSAA	2 cut(s)	118, 289
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw26I	GTCTC	3 cut(s)	174, 395, 455
AlwI	GGATC	3 cut(s)	216, 303, 333
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	4 cut(s)	41, 83, 165, 542
ApoI	RAATTY	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	41, 542
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	168, 200
BauI	CACGAG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	190
BbvI	GCAGC	4 cut(s)	53, 95, 177, 529
BceAI	ACGGC	2 cut(s)	108, 391
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	3 cut(s)	174, 395, 455
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	4 cut(s)	42, 84, 166, 543
BlsI	GCNGC	4 cut(s)	43, 85, 167, 544
Bme1390I	CCNGG	2 cut(s)	14, 441
BmrFI	CCNGG	2 cut(s)	14, 441
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	14
BsaHI	GRCGYC	2 cut(s)	256, 385
BsaWI	WCCGGW	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	4 cut(s)	53, 95, 177, 529
Bsh1236I	CGCG	1 cut(s)	540
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	322
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	3 cut(s)	14, 76, 315
BslFI	GGGAC	1 cut(s)	372
BsmAI	GTCTC	3 cut(s)	174, 395, 455
BsmFI	GGGAC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	133, 208, 295, 338, 472
BspACI	CCGC	4 cut(s)	17, 190, 334, 342
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	540
BspPI	GGATC	3 cut(s)	216, 303, 333
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	75
BssMI	GATC	5 cut(s)	133, 208, 295, 338, 472
BssNI	GRCGYC	2 cut(s)	256, 385
BssSI	CACGAG	1 cut(s)	270
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	394, 482
BstACI	GRCGYC	2 cut(s)	256, 385
BstC8I	GCNNGC	2 cut(s)	81, 517
BstDEI	CTNAG	2 cut(s)	359, 459
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	41, 542
BstKTI	GATC	5 cut(s)	136, 211, 298, 341, 475
BstMAI	GTCTC	3 cut(s)	174, 395, 455
BstMBI	GATC	5 cut(s)	133, 208, 295, 338, 472
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 350, 521
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	2 cut(s)	12, 439
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	4 cut(s)	53, 95, 177, 529
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	175, 202
Cac8I	GCNNGC	2 cut(s)	81, 517
CfoI	GCGC	2 cut(s)	41, 542
Cfr10I	RCCGGY	1 cut(s)	75
CseI	GACGC	2 cut(s)	245, 374
Csp6I	GTAC	3 cut(s)	157, 213, 478
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	4 cut(s)	79, 86, 146, 322
CviKI_1	RGCY	4 cut(s)	79, 86, 146, 322
CviQI	GTAC	3 cut(s)	157, 213, 478
DdeI	CTNAG	2 cut(s)	359, 459
DpnI	GATC	5 cut(s)	135, 210, 297, 340, 474
DpnII	GATC	5 cut(s)	133, 208, 295, 338, 472
EciI	GGCGGA	3 cut(s)	32, 179, 331
Eco147I	AGGCCT	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	439
FaeI	CATG	1 cut(s)	197
FaiI	YATR	7 cut(s)	9, 185, 195, 418, 426, 433, 435
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	341
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	42, 84, 166, 543
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	4 cut(s)	42, 84, 166, 543
FspI	TGCGCA	1 cut(s)	40
GlaI	GCGC	2 cut(s)	40, 541
GluI	GCNGC	4 cut(s)	42, 84, 166, 543
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	3 cut(s)	14, 76, 315
HgaI	GACGC	2 cut(s)	245, 374
HhaI	GCGC	2 cut(s)	41, 542
Hin1I	GRCGYC	2 cut(s)	256, 385
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	2 cut(s)	39, 540
HinP1I	GCGC	2 cut(s)	39, 540
HinfI	GANTC	5 cut(s)	20, 243, 329, 403, 463
HpaII	CCGG	3 cut(s)	14, 76, 315
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	8 cut(s)	224, 260, 272, 293, 326, 407, 494, 556
HpyAV	CCTTC	2 cut(s)	170, 567
HpyCH4III	ACNGT	2 cut(s)	394, 482
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 350, 521
HpyF3I	CTNAG	2 cut(s)	359, 459
HpySE526I	ACGT	1 cut(s)	550
Hsp92I	GRCGYC	2 cut(s)	256, 385
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	2 cut(s)	39, 540
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	133, 208, 295, 338, 472
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	4 cut(s)	53, 95, 177, 529
LweI	GCATC	1 cut(s)	26
MaeII	ACGT	1 cut(s)	550
MalI	GATC	5 cut(s)	135, 210, 297, 340, 474
MboI	GATC	5 cut(s)	133, 208, 295, 338, 472
MboII	GAAGA	2 cut(s)	101, 190
MfeI	CAATTG	2 cut(s)	26, 118
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	5 cut(s)	26, 92, 100, 118, 299
MlyI	GAGTC	2 cut(s)	397, 457
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	8 cut(s)	26, 150, 220, 246, 271, 333, 403, 493
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	3 cut(s)	14, 76, 315
MspR9I	CCNGG	2 cut(s)	14, 441
MunI	CAATTG	2 cut(s)	26, 118
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	50, 350, 521
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	5 cut(s)	133, 208, 295, 338, 472
NlaIII	CATG	1 cut(s)	197
NsbI	TGCGCA	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	20, 243, 329
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	4 cut(s)	43, 85, 167, 544
PleI	GAGTC	2 cut(s)	397, 457
PpsI	GAGTC	2 cut(s)	397, 457
Psp1406I	AACGTT	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	133
PsyI	GACNNNGTC	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	3 cut(s)	158, 214, 479
RsaNI	GTAC	3 cut(s)	157, 213, 478
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	4 cut(s)	42, 84, 166, 543
Sau3AI	GATC	5 cut(s)	133, 208, 295, 338, 472
SchI	GAGTC	2 cut(s)	397, 457
ScrFI	CCNGG	2 cut(s)	14, 441
SetI	ASST	6 cut(s)	61, 88, 231, 504, 553, 578
SfaNI	GCATC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	5 cut(s)	26, 92, 100, 118, 299
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	4 cut(s)	17, 190, 334, 342
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	12, 439
TaaI	ACNGT	2 cut(s)	394, 482
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	2 cut(s)	63, 223
TasI	AATT	5 cut(s)	26, 92, 100, 118, 299
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	3 cut(s)	20, 243, 329
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	175, 209
TseI	GCWGC	4 cut(s)	41, 83, 165, 542
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	175, 209
Tth111I	GACNNNGTC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.