Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000369.1

Orthogroup ID

OG0003284

Physical Location & Seq

Genomic Coordinates Forward (+)

33212 .. 33877

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000369.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgttccccttcttcaaagggaaggtgtttgaaagcggcatagacgccgcgtttgagtcaacgagaaaatatgaagcttacctcttcaaagacaaccagtacgctcgtataaactacggttctgattccactactcccggccacaagatcacctccactgtcaccactgtcaactttcctagtttgaaaaacaccatctttgaaagtggaattgatgcagcgtttgcttcgcacaagactgatcaggcttacctattcaaaggagatacctacacacgcatcaactttgctcctggcaccgtagatgactacatcatcggtggcgtcaagaagatccttcccaattggccctctctacaaccctacttgccttgcaaaaactgtggacttgacgttcacagtcacactagccctcgcgttaatgatgatgaccgtgataaagtaatttggagttcacattcaaaatcaattgacaatgaatgcagtgactcaaacccttataaacccacatcatcagtggcgtcaagaagatccttcccaattgggccctctctgcaaccttacttgccttgcaaaaaccgtggacttgacgttcccagtcacactagccctggtgttgatagtcacactagccctggttttacttttccaatgtatgagttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemopexin

Protein Analysis

221

Amino Acids

24.58

Weight (kDa)

7.04

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0076401 RchiOBHm_Chr5g0076491 RchiOBHm_Chr5g0076541 RchiOBHm_Chr5g0076681 RchiOBHm_Chr5g0076801
rosa_multiflora	Rmu_sc0000369.1_g000005 Rmu_sc0000369.1_g000007 Rmu_sc0000369.1_g000008 Rmu_sc0000369.1_g000010 Rmu_sc0002400.1_g000007 Rmu_sc0006747.1_g000015 Rmu_ssc0000184.1_g000027 Rmu_ssc0000184.1_g000037
rosa_roxburghii	Rroxscaffold_1G00005320 Rroxscaffold_1G00005330 Rroxscaffold_1G00005350 Rroxscaffold_1G00005390 Rroxscaffold_1G00005410
rosa_rugosa	Rorug05G0447500.1 Rorug05G0447600 Rorug05G0447700 Rorug05G0448600 Rorug05G0448800 Rorug05G0448900 Rorug05G0449000 Rorug05G0449100
rosa_samantha	Rh5AG502400 Rh5AG503500 Rh5BG524200 Rh5CG547800 Rh5DG536800 Rh5DG536900 Rh5DG537000 Rh5DG537100
rosa_wichuraiana	Rw5G046680 Rw5G046690 Rw5G046700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	501, 664
AccB1I	GGYRCC	1 cut(s)	296
AccII	CGCG	2 cut(s)	50, 417
AciI	CCGC	2 cut(s)	36, 48
AclWI	GGATC	2 cut(s)	328, 525
AcoI	YGGCCR	1 cut(s)	139
AcyI	GRCGYC	3 cut(s)	45, 324, 521
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	7 cut(s)	16, 32, 88, 187, 203, 259, 462
AjnI	CCWGG	3 cut(s)	292, 610, 634
AloI	GAACNNNNNNTCC	4 cut(s)	378, 410, 576, 608
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
AlwI	GGATC	2 cut(s)	328, 525
AoxI	GGCC	3 cut(s)	139, 347, 545
ApaI	GGGCCC	1 cut(s)	549
ApeKI	GCWGC	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AspS9I	GGNCC	3 cut(s)	348, 545, 546
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	142, 154
BaeGI	GKGCMC	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	3 cut(s)	294, 612, 636
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	138
BfaI	CTAG	4 cut(s)	180, 408, 606, 630
BisI	GCNGC	3 cut(s)	37, 48, 219
BlsI	GCNGC	3 cut(s)	38, 49, 220
Bme1390I	CCNGG	4 cut(s)	138, 294, 612, 636
BmgT120I	GGNCC	3 cut(s)	348, 545, 546
BmiI	GGNNCC	2 cut(s)	298, 547
BmrFI	CCNGG	4 cut(s)	138, 294, 612, 636
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	2 cut(s)	205, 288
BmuI	ACTGGG	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	138
BsaHI	GRCGYC	3 cut(s)	45, 324, 521
BsaJI	CCNNGG	3 cut(s)	580, 610, 634
Bse1I	ACTGG	2 cut(s)	97, 597
BseBI	CCWGG	3 cut(s)	294, 612, 636
BseDI	CCNNGG	3 cut(s)	580, 610, 634
BseNI	ACTGG	2 cut(s)	97, 597
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	230
Bsh1236I	CGCG	2 cut(s)	50, 417
BshFI	GGCC	3 cut(s)	141, 349, 547
BshNI	GGYRCC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	141, 349, 547
Bsp120I	GGGCCC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	4 cut(s)	147, 241, 333, 530
BspACI	CCGC	2 cut(s)	36, 48
BspANI	GGCC	3 cut(s)	141, 349, 547
BspFNI	CGCG	2 cut(s)	50, 417
BspLI	GGNNCC	2 cut(s)	298, 547
BspPI	GGATC	2 cut(s)	328, 525
BspT107I	GGYRCC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	97, 597
BssECI	CCNNGG	3 cut(s)	580, 610, 634
BssMI	GATC	4 cut(s)	147, 241, 333, 530
BssNI	GRCGYC	3 cut(s)	45, 324, 521
Bst2UI	CCWGG	3 cut(s)	294, 612, 636
Bst4CI	ACNGT	8 cut(s)	119, 160, 169, 301, 383, 401, 434, 581
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	3 cut(s)	45, 324, 521
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	580
BstFNI	CGCG	2 cut(s)	50, 417
BstKTI	GATC	4 cut(s)	150, 244, 336, 533
BstMBI	GATC	4 cut(s)	147, 241, 333, 530
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 553
BstNI	CCWGG	3 cut(s)	294, 612, 636
BstSCI	CCNGG	4 cut(s)	136, 292, 610, 634
BstSLI	GKGCMC	1 cut(s)	549
BstUI	CGCG	2 cut(s)	50, 417
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	333, 530
BstYI	RGATCY	2 cut(s)	333, 530
BsuRI	GGCC	3 cut(s)	141, 349, 547
BtgI	CCRYGG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	4 cut(s)	156, 165, 490, 522
Cfr13I	GGNCC	3 cut(s)	348, 545, 546
CseI	GACGC	3 cut(s)	53, 313, 510
Csp6I	GTAC	1 cut(s)	100
CspCI	CAANNNNNGTGG	4 cut(s)	364, 399, 562, 597
CviJI	RGCY	8 cut(s)	77, 141, 248, 349, 411, 547, 609, 633
CviKI_1	RGCY	8 cut(s)	77, 141, 248, 349, 411, 547, 609, 633
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	4 cut(s)	149, 243, 335, 532
DpnII	GATC	4 cut(s)	147, 241, 333, 530
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	3 cut(s)	292, 610, 634
EcoT38I	GRGCYC	1 cut(s)	549
FaiI	YATR	6 cut(s)	41, 72, 110, 501, 657, 664
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	37, 48, 219
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	3 cut(s)	37, 48, 219
FspBI	CTAG	4 cut(s)	180, 408, 606, 630
GluI	GCNGC	3 cut(s)	37, 48, 219
HaeIII	GGCC	3 cut(s)	141, 349, 547
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	3 cut(s)	53, 313, 510
Hin1I	GRCGYC	3 cut(s)	45, 324, 521
HincII	GTYRAC	2 cut(s)	60, 172
HindII	GTYRAC	2 cut(s)	60, 172
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	3 cut(s)	56, 125, 488
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	142, 154
Hpy166II	GTNNAC	6 cut(s)	60, 172, 386, 397, 455, 584
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	328, 525
Hpy8I	GTNNAC	6 cut(s)	60, 172, 386, 397, 455, 584
HpyAV	CCTTC	4 cut(s)	16, 19, 347, 544
HpyCH4III	ACNGT	8 cut(s)	119, 160, 169, 301, 383, 401, 434, 581
HpyCH4IV	ACGT	2 cut(s)	393, 591
HpyCH4V	TGCA	5 cut(s)	218, 375, 483, 556, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 553
HpySE526I	ACGT	2 cut(s)	393, 591
Hsp92I	GRCGYC	3 cut(s)	45, 324, 521
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	147, 241, 333, 530
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	2 cut(s)	205, 288
MaeI	CTAG	4 cut(s)	180, 408, 606, 630
MaeII	ACGT	2 cut(s)	393, 591
MaeIII	GTNAC	5 cut(s)	160, 401, 485, 599, 623
MalI	GATC	4 cut(s)	149, 243, 335, 532
MboI	GATC	4 cut(s)	147, 241, 333, 530
MboII	GAAGA	4 cut(s)	4, 76, 343, 540
MfeI	CAATTG	3 cut(s)	343, 468, 540
MflI	RGATCY	2 cut(s)	333, 530
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	5 cut(s)	210, 343, 444, 468, 540
MlyI	GAGTC	2 cut(s)	65, 482
MnlI	CCTC	5 cut(s)	92, 163, 361, 423, 559
MseI	TTAA	1 cut(s)	420
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	4 cut(s)	138, 294, 612, 636
MunI	CAATTG	3 cut(s)	343, 468, 540
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	3 cut(s)	294, 612, 636
MvnI	CGCG	2 cut(s)	50, 417
MwoI	GCNNNNNNNGC	2 cut(s)	224, 553
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	147, 241, 333, 530
NlaIV	GGNNCC	2 cut(s)	298, 547
NmuCI	GTSAC	5 cut(s)	160, 401, 485, 599, 623
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	38, 49, 220
PleI	GAGTC	2 cut(s)	64, 482
PpsI	GAGTC	2 cut(s)	64, 482
PsiI	TTATAA	2 cut(s)	501, 664
Psp6I	CCWGG	3 cut(s)	292, 610, 634
PspGI	CCWGG	3 cut(s)	292, 610, 634
PspN4I	GGNNCC	2 cut(s)	298, 547
PspOMI	GGGCCC	1 cut(s)	545
PspPI	GGNCC	3 cut(s)	348, 545, 546
PsuI	RGATCY	2 cut(s)	333, 530
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	3 cut(s)	37, 48, 219
Sau3AI	GATC	4 cut(s)	147, 241, 333, 530
Sau96I	GGNCC	3 cut(s)	348, 545, 546
SchI	GAGTC	2 cut(s)	65, 482
ScrFI	CCNGG	4 cut(s)	138, 294, 612, 636
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	9 cut(s)	27, 79, 84, 155, 255, 272, 396, 562, 594
SfaNI	GCATC	2 cut(s)	205, 288
Sse9I	AATT	5 cut(s)	210, 343, 444, 468, 540
SsiI	CCGC	2 cut(s)	36, 48
SspMI	CTAG	4 cut(s)	180, 408, 606, 630
StyD4I	CCNGG	4 cut(s)	136, 292, 610, 634
TaaI	ACNGT	8 cut(s)	119, 160, 169, 301, 383, 401, 434, 581
TaiI	ACGT	2 cut(s)	396, 594
TasI	AATT	5 cut(s)	210, 343, 444, 468, 540
TauI	GCSGC	2 cut(s)	39, 50
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	4 cut(s)	163, 172, 490, 522
TseFI	GTSAC	5 cut(s)	160, 401, 485, 599, 623
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	5 cut(s)	160, 401, 485, 599, 623
TspDTI	ATGAA	2 cut(s)	87, 492
TspRI	CASTG	4 cut(s)	163, 172, 490, 522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	4 cut(s)	180, 408, 606, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.