Rroxscaffold_1G00005320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003284
Physical Location & Seq
Forward (+)
7288866 .. 7289977
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005320.1

Sequence Viewer

Length: 819 bp
ATGTCGATCCCGCCGAATTCACCATGGAGAGGATGCGCAGCAAATTTCCGTCAACCTGTCAGTGAACGTGCAGCTCAGTCTTTGGTGGAAACTGTTTATAACTTTAATTGCCGTGTTCCAAATCCCCCTCTGGCTGACATCGAGTATAGAAGCGGCAGTGGAGAAGAAGACATACTCCGCCATGTGTTCCGCTGGGATCTTACCCCCTATCAAGAGGTGTTTCAGAATGGCTTCCAAGCGAGGCGTCAAGAAAACACTACCAATGAAGTCTACTTCAATCTGGATCACTACGTCCATCATGGCGGTAGGCCTCTTGATTCCCGCCGACCCGCGACCCACGCGTTCGTTAGCACCACCCTTAACAGCGGTTGGCATCCCACCGTCACTGAGACTGTGGAGGAAGTATATCGCTATGAAATATATGCTCCCGGTGGCATTTGGGTTGTTGAAACTCTTGGTGACCGTTACCAGTACCCGGCCCAAGATGAGCATTTGGCAACCAAGCGAGAGGAACGACTAGCCGACAACTCTATCGCCACCGATTGGTATTCCCACGATGTGGCTGACTTTGAGAGTTACATAAATGCTGCATTCCGTTCGTCTCGCGAAAAAGAAGCCTATCTATTCTTGAAGAACGAGTATGTGCTAATCGACTATGCTCCTGGCAATAATGATGACAAGGTATTGAACGGACCATTTCTTATCTGCAATGGGTTTCCATCCCTCACGGGCACAGCCTTTGCAGAACATGGTATAGATTGTGCCTTTGCGTCTCATAATGGGAATGAAGCCTTCATTATGGGAATCTCTGCGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

272

Amino Acids

30.95

Weight (kDa)

5.1

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scabin-like PF22596 63 - 163 1e-18 Scabin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
Acc16I TGCGCA 2 cut(s) 37, 813
AccB7I CCANNNNNTGG 2 cut(s) 543, 559
AccI GTMKAC 1 cut(s) 270
AccII CGCG 3 cut(s) 332, 341, 606
AciI CCGC 8 cut(s) 11, 153, 178, 190, 303, 322, 330, 366
AclWI GGATC 2 cut(s) 204, 291
AcsI RAATTY 2 cut(s) 16, 43
AcyI GRCGYC 1 cut(s) 244
AdeI CACNNNGTG 1 cut(s) 559
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 29, 475, 543, 559
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 4 cut(s) 277, 449, 631, 688
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 3 cut(s) 383, 606, 777
AlwI GGATC 2 cut(s) 204, 291
AoxI GGCC 2 cut(s) 308, 477
ApeKI GCWGC 3 cut(s) 38, 71, 587
ApoI RAATTY 2 cut(s) 16, 43
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 2 cut(s) 38, 814
AspS9I GGNCC 2 cut(s) 478, 692
AsuC2I CCSGG 2 cut(s) 429, 476
AsuHPI GGTGA 2 cut(s) 12, 470
AvaII GGWCC 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 734
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 50, 83, 574
BccI CCATC 2 cut(s) 303, 727
BceAI ACGGC 1 cut(s) 96
BcgI CGANNNNNNTGC 2 cut(s) 579, 613
BciT130I CCWGG 1 cut(s) 663
BcnI CCSGG 2 cut(s) 429, 476
BcoDI GTCTC 3 cut(s) 383, 606, 777
BfaI CTAG 1 cut(s) 518
BisI GCNGC 4 cut(s) 39, 72, 154, 588
BlsI GCNGC 4 cut(s) 40, 73, 155, 589
Bme1390I CCNGG 3 cut(s) 429, 476, 663
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 2 cut(s) 478, 692
BmrFI CCNGG 3 cut(s) 429, 476, 663
BmsI GCATC 2 cut(s) 23, 382
BpiI GAAGAC 1 cut(s) 174
BpuMI CCSGG 2 cut(s) 429, 476
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 475, 543, 559
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 1 cut(s) 715
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 3 cut(s) 38, 373, 719
BseLI CCNNNNNNNGG 4 cut(s) 29, 475, 543, 559
BseMI GCAATG 1 cut(s) 715
BseMII CTCAG 2 cut(s) 89, 378
BseNI ACTGG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 734
BseXI GCAGC 3 cut(s) 50, 83, 574
BseYI CCCAGC 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 3 cut(s) 332, 341, 606
BshFI GGCC 2 cut(s) 310, 479
BsiSI CCGG 2 cut(s) 429, 476
BslI CCNNNNNNNGG 4 cut(s) 29, 475, 543, 559
BsmAI GTCTC 3 cut(s) 383, 606, 777
BsmBI CGTCTC 2 cut(s) 606, 777
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 310, 479
Bsp1286I GDGCHC 1 cut(s) 734
Bsp143I GATC 3 cut(s) 6, 196, 283
Bsp19I CCATGG 1 cut(s) 23
Bsp68I TCGCGA 1 cut(s) 606
BspACI CCGC 8 cut(s) 11, 153, 178, 190, 303, 322, 330, 366
BspANI GGCC 2 cut(s) 310, 479
BspCNI CTCAG 2 cut(s) 88, 379
BspFNI CGCG 3 cut(s) 332, 341, 606
BspPI GGATC 2 cut(s) 204, 291
BsrDI GCAATG 1 cut(s) 715
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 6, 196, 283
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 4 cut(s) 94, 382, 394, 464
BstACI GRCGYC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 75, 387
BstDSI CCRYGG 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 3 cut(s) 38, 373, 719
BstFNI CGCG 3 cut(s) 332, 341, 606
BstHHI GCGC 2 cut(s) 38, 814
BstKTI GATC 3 cut(s) 9, 199, 286
BstMAI GTCTC 3 cut(s) 383, 606, 777
BstMBI GATC 3 cut(s) 6, 196, 283
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 663
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 3 cut(s) 427, 474, 661
BstSLI GKGCMC 1 cut(s) 734
BstUI CGCG 3 cut(s) 332, 341, 606
BstV1I GCAGC 3 cut(s) 50, 83, 574
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 310, 479
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 3 cut(s) 38, 373, 719
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 4 cut(s) 67, 163, 384, 814
BtuMI TCGCGA 1 cut(s) 606
CfoI GCGC 2 cut(s) 38, 814
Cfr13I GGNCC 2 cut(s) 478, 692
CseI GACGC 2 cut(s) 233, 759
Csp6I GTAC 1 cut(s) 472
CviAII CATG 4 cut(s) 24, 182, 299, 749
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 2 cut(s) 75, 387
DpnI GATC 3 cut(s) 8, 198, 285
DpnII GATC 3 cut(s) 6, 196, 283
DraIII CACNNNGTG 1 cut(s) 559
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 23
Eco147I AGGCCT 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 692
Eco91I GGTNACC 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 458
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
Esp3I CGTCTC 2 cut(s) 606, 777
FaeI CATG 4 cut(s) 27, 185, 302, 752
FatI CATG 4 cut(s) 23, 181, 298, 748
FauI CCCGC 3 cut(s) 18, 329, 337
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 39, 72, 154, 588
FokI GGATG 3 cut(s) 45, 360, 706
Fsp4HI GCNGC 4 cut(s) 39, 72, 154, 588
FspBI CTAG 1 cut(s) 518
FspI TGCGCA 2 cut(s) 37, 813
GlaI GCGC 2 cut(s) 37, 813
GluI GCNGC 4 cut(s) 39, 72, 154, 588
GsaI CCCAGC 1 cut(s) 196
HaeIII GGCC 2 cut(s) 310, 479
HapII CCGG 2 cut(s) 429, 476
HgaI GACGC 2 cut(s) 233, 759
HhaI GCGC 2 cut(s) 38, 814
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 4 cut(s) 27, 185, 302, 752
Hin6I GCGC 2 cut(s) 36, 812
HinP1I GCGC 2 cut(s) 36, 812
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 2 cut(s) 317, 804
HpaII CCGG 2 cut(s) 429, 476
HphI GGTGA 2 cut(s) 12, 470
Hpy166II GTNNAC 3 cut(s) 53, 65, 271
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 6 cut(s) 212, 248, 281, 314, 605, 628
Hpy8I GTNNAC 3 cut(s) 53, 65, 271
HpyAV CCTTC 1 cut(s) 802
HpyCH4III ACNGT 4 cut(s) 94, 382, 394, 464
HpyCH4IV ACGT 2 cut(s) 67, 291
HpyCH4V TGCA 4 cut(s) 71, 590, 708, 743
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 2 cut(s) 75, 387
HpySE526I ACGT 2 cut(s) 67, 291
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 4 cut(s) 27, 185, 302, 752
HspAI GCGC 2 cut(s) 36, 812
Kzo9I GATC 3 cut(s) 6, 196, 283
LmnI GCTCC 2 cut(s) 430, 664
LpnPI CCDG 9 cut(s) 69, 116, 178, 266, 442, 482, 489, 648, 675
Lsp1109I GCAGC 3 cut(s) 50, 83, 574
LweI GCATC 2 cut(s) 23, 382
MaeI CTAG 1 cut(s) 518
MaeII ACGT 2 cut(s) 67, 291
MaeIII GTNAC 4 cut(s) 382, 458, 464, 575
MalI GATC 3 cut(s) 8, 198, 285
MboI GATC 3 cut(s) 6, 196, 283
MboII GAAGA 3 cut(s) 176, 179, 643
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 734
MluCI AATT 3 cut(s) 16, 43, 106
MluI ACGCGT 1 cut(s) 339
MnlI CCTC 8 cut(s) 23, 138, 208, 234, 321, 391, 502, 734
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 2 cut(s) 105, 360
MspA1I CMGCKG 2 cut(s) 192, 366
MspI CCGG 2 cut(s) 429, 476
MspR9I CCNGG 3 cut(s) 429, 476, 663
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 1 cut(s) 663
MvnI CGCG 3 cut(s) 332, 341, 606
MwoI GCNNNNNNNGC 1 cut(s) 338
NciI CCSGG 2 cut(s) 429, 476
NcoI CCATGG 1 cut(s) 23
NdeII GATC 3 cut(s) 6, 196, 283
NlaIII CATG 4 cut(s) 27, 185, 302, 752
NmuCI GTSAC 2 cut(s) 382, 458
NruI TCGCGA 1 cut(s) 606
NsbI TGCGCA 2 cut(s) 37, 813
PceI AGGCCT 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 590
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 317, 804
PflMI CCANNNNNTGG 2 cut(s) 543, 559
PkrI GCNGC 4 cut(s) 40, 73, 155, 589
PsiI TTATAA 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 661
PspEI GGTNACC 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 661
PspPI GGNCC 2 cut(s) 478, 692
PsuI RGATCY 1 cut(s) 196
RruI TCGCGA 1 cut(s) 606
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 2 cut(s) 105, 360
SatI GCNGC 4 cut(s) 39, 72, 154, 588
Sau3AI GATC 3 cut(s) 6, 196, 283
Sau96I GGNCC 2 cut(s) 478, 692
ScrFI CCNGG 3 cut(s) 429, 476, 663
SduI GDGCHC 1 cut(s) 734
SetI ASST 6 cut(s) 58, 70, 76, 219, 294, 684
SfaNI GCATC 2 cut(s) 23, 382
SinI GGWCC 1 cut(s) 692
Sse9I AATT 3 cut(s) 16, 43, 106
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 8 cut(s) 11, 153, 178, 190, 303, 322, 330, 366
SspMI CTAG 1 cut(s) 518
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 3 cut(s) 427, 474, 661
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 4 cut(s) 94, 382, 394, 464
TaiI ACGT 2 cut(s) 70, 294
TaqI TCGA 3 cut(s) 5, 141, 651
TasI AATT 3 cut(s) 16, 43, 106
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 2 cut(s) 317, 804
Tru1I TTAA 2 cut(s) 105, 360
Tru9I TTAA 2 cut(s) 105, 360
TscAI CASTG 3 cut(s) 67, 163, 391
TseFI GTSAC 2 cut(s) 382, 458
TseI GCWGC 3 cut(s) 38, 71, 587
Tsp45I GTSAC 2 cut(s) 382, 458
TspDTI ATGAA 4 cut(s) 279, 429, 784, 801
TspGWI ACGGA 3 cut(s) 38, 584, 705
TspRI CASTG 3 cut(s) 67, 163, 391
Van91I CCANNNNNTGG 2 cut(s) 543, 559
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 2 cut(s) 16, 43
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.