Rh5AG502400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003284
Physical Location & Seq
Forward (+)
85026260 .. 85027916
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG502400.1

Sequence Viewer

Length: 1236 bp
ATGTCGATCCCGCCGAATTCACTATGGAGAGGATGTGCAGCAAACTTCCCTCAACCTGTCGATGAAGACGACGTGCGTGCAGCTCAATTTTTGGTGGAAACTGTTTATTACTTTAATTGCCATATTGCAGATCCCCTTCTGGCTGACATCGAGTACAGAAGCAGCAGTGGAGAAGGAGACATACTCCACCATGTGTTCCGCTGGAATCTTACTCCCTGTCATGAGGTCTTTCAACATGGCTTCCAAGCAAGGTGTCAAGATAACACTCCCGACGAGGTCTACTACAATCTGGCTCACTACATCCGTCAGGGAGGTAGGCCTCTTGATTCCCGACGACCCACCACCCACACCTTCATTAGCACCACGCTCGACAGTGCATGGCATCCCACCGTCACTGAGACTATGAGTGAAGTATGTCGTTACGAGATATACGTTCCCGGTGGCATTTGGGTTGCTCAGACTCTTGGTGATGATCATAATGCCAAAGACCAAGACGAGGTGTGCTTTGTTGCTGGCATTGCCCCTCAATACATTCGGTCTGCTCAACGCTTCAGGCTCACTTCTGGAGGGTCGAGCGAGCATCTGCTATTGAACTATGCTTCTGACATGCCAGACGACAAGGTGGTGCCGCTTCTTATCAGCAATGGGTATCTATCCCTCGCGGGCAAAGCCTTTGCAGAGCATGGAATAGACTGTGCTTTTGGGTCTCATGATGGAGATGAAGCCTTCCTCTTCTCTGGGAATCTCTGCGCACCGATTAATTACTCACCAGGCACCCTAAAGGGCTTAATCACCAAACCCCTGATGACCATCACTACCATGTTCCCCTTCTTGAAAAAGGCGGAGTTTAAGAGCAGCATAGACGCCGCGTTTGAGTCAACGAGAAAATATGAAGCGTATCTCTTCAAAGTCGACCGGTATGCTCTTATAAACTACGGTTCTGATAATCCCCGCCTCATCCACGTCAAGCTCATCGCTGACGGCTTCCCCGGTTTGAAAAACACCATCTTTAAAAGTGGAATTGATGCAGCGTTTGCTTCGCACAGGACTGATGAACCACACCTATTCAAAGGTGATTCCTGCGCAGTTTTCAACACCACAAATGGCAACATCATTGGTGGAGTGAAGAAAATCGTTTCCAATTGGCCCTCTTTGCAACTCATCTTGCCTCGCAAAAATCGTGGACTTGAGGTCGTTCCCAAGGTTGACCTCGAACTCAAATGTTCGATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemopexin

Protein Analysis

411

Amino Acids

45.79

Weight (kDa)

5.91

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Scabin-like PF22596 66 - 185 7.3e-22 Scabin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
Acc16I TGCGCA 2 cut(s) 751, 1084
AccB1I GGYRCC 2 cut(s) 625, 773
AccI GTMKAC 2 cut(s) 279, 912
AccII CGCG 2 cut(s) 662, 869
AciI CCGC 7 cut(s) 11, 199, 629, 662, 842, 867, 952
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 864
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 496
AgeI ACCGGT 1 cut(s) 915
AgsI TTSAA 7 cut(s) 233, 592, 835, 907, 997, 1069, 1093
AhdI GACNNNNNGTC 1 cut(s) 1190
AjiI CACGTC 2 cut(s) 73, 964
AjnI CCWGG 1 cut(s) 769
AluBI AGCT 2 cut(s) 83, 970
AluI AGCT 2 cut(s) 83, 970
Alw26I GTCTC 3 cut(s) 171, 392, 711
AlwI GGATC 1 cut(s) 125
AoxI GGCC 2 cut(s) 317, 1145
ApeKI GCWGC 5 cut(s) 38, 80, 162, 855, 1028
ApoI RAATTY 1 cut(s) 16
ArsI GACNNNNNNTTYG 4 cut(s) 683, 715, 854, 886
AseI ATTAAT 1 cut(s) 759
AsiGI ACCGGT 1 cut(s) 915
AspLEI GCGC 2 cut(s) 752, 1085
AspS9I GGNCC 1 cut(s) 1146
AsuC2I CCSGG 2 cut(s) 438, 990
AsuHPI GGTGA 4 cut(s) 479, 759, 784, 1085
BanI GGYRCC 2 cut(s) 625, 773
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 5 cut(s) 50, 92, 174, 867, 1040
BccI CCATC 3 cut(s) 707, 818, 1013
BceAI ACGGC 1 cut(s) 997
BcgI CGANNNNNNTGC 6 cut(s) 59, 93, 349, 383, 902, 936
BciT130I CCWGG 1 cut(s) 771
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 2 cut(s) 438, 990
BcoDI GTCTC 3 cut(s) 171, 392, 711
BisI GCNGC 7 cut(s) 39, 81, 163, 629, 856, 867, 1029
BlsI GCNGC 7 cut(s) 40, 82, 164, 630, 857, 868, 1030
Bme1390I CCNGG 3 cut(s) 438, 771, 990
BmeRI GACNNNNNGTC 1 cut(s) 1190
BmgBI CACGTC 2 cut(s) 73, 964
BmgT120I GGNCC 1 cut(s) 1146
BmiI GGNNCC 2 cut(s) 627, 775
BmrFI CCNGG 3 cut(s) 438, 771, 990
BmsI GCATC 3 cut(s) 391, 589, 1015
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 1208
BpuMI CCSGG 2 cut(s) 438, 990
BsaBI GATNNNNATC 1 cut(s) 809
BsaHI GRCGYC 1 cut(s) 864
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 988, 1200
BsaWI WCCGGW 1 cut(s) 915
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse118I RCCGGY 1 cut(s) 915
Bse3DI GCAATG 2 cut(s) 516, 649
Bse8I GATNNNNATC 1 cut(s) 809
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 2 cut(s) 988, 1200
BseGI GGATG 4 cut(s) 38, 300, 382, 957
BseJI GATNNNNATC 1 cut(s) 809
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMI GCAATG 2 cut(s) 516, 649
BseMII CTCAG 2 cut(s) 387, 470
BseXI GCAGC 5 cut(s) 50, 92, 174, 867, 1040
BsgI GTGCAG 2 cut(s) 57, 99
Bsh1236I CGCG 2 cut(s) 662, 869
Bsh1285I CGRYCG 1 cut(s) 916
BshFI GGCC 2 cut(s) 319, 1147
BshNI GGYRCC 2 cut(s) 625, 773
BshTI ACCGGT 1 cut(s) 915
BsiEI CGRYCG 1 cut(s) 916
BsiSI CCGG 3 cut(s) 438, 916, 990
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 3 cut(s) 171, 392, 711
BsnI GGCC 2 cut(s) 319, 1147
Bso31I GGTCTC 1 cut(s) 711
Bsp143I GATC 3 cut(s) 6, 130, 472
BspACI CCGC 7 cut(s) 11, 199, 629, 662, 842, 867, 952
BspANI GGCC 2 cut(s) 319, 1147
BspCNI CTCAG 2 cut(s) 388, 469
BspFNI CGCG 2 cut(s) 662, 869
BspHI TCATGA 2 cut(s) 220, 709
BspLI GGNNCC 2 cut(s) 627, 775
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 625, 773
BspTNI GGTCTC 1 cut(s) 711
BsrDI GCAATG 2 cut(s) 516, 649
BsrFI RCCGGY 1 cut(s) 915
BssAI RCCGGY 1 cut(s) 915
BssECI CCNNGG 2 cut(s) 988, 1200
BssMI GATC 3 cut(s) 6, 130, 472
BssNI GRCGYC 1 cut(s) 864
BssT1I CCWWGG 1 cut(s) 1200
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 5 cut(s) 103, 374, 391, 695, 938
Bst6I CTCTTC 2 cut(s) 737, 908
BstACI GRCGYC 1 cut(s) 864
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstC8I GCNNGC 4 cut(s) 78, 514, 578, 664
BstDEI CTNAG 2 cut(s) 396, 456
BstF5I GGATG 4 cut(s) 38, 300, 382, 957
BstFNI CGCG 2 cut(s) 662, 869
BstHHI GCGC 2 cut(s) 752, 1085
BstKTI GATC 3 cut(s) 9, 133, 475
BstMAI GTCTC 3 cut(s) 171, 392, 711
BstMBI GATC 3 cut(s) 6, 130, 472
BstMCI CGRYCG 1 cut(s) 916
BstMWI GCNNNNNNNGC 4 cut(s) 518, 668, 1034, 1153
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 436, 769, 988
BstUI CGCG 2 cut(s) 662, 869
BstV1I GCAGC 5 cut(s) 50, 92, 174, 867, 1040
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 2 cut(s) 319, 1147
BtgZI GCGATG 1 cut(s) 958
BtrI CACGTC 2 cut(s) 73, 964
BtsCI GGATG 4 cut(s) 38, 300, 382, 957
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 172, 379, 393
Cac8I GCNNGC 4 cut(s) 78, 514, 578, 664
CciI TCATGA 2 cut(s) 220, 709
CfoI GCGC 2 cut(s) 752, 1085
Cfr10I RCCGGY 1 cut(s) 915
Cfr13I GGNCC 1 cut(s) 1146
CseI GACGC 1 cut(s) 872
Csp6I GTAC 1 cut(s) 154
CspAI ACCGGT 1 cut(s) 915
CspCI CAANNNNNGTGG 2 cut(s) 1162, 1197
CviAII CATG 8 cut(s) 191, 221, 236, 378, 607, 683, 710, 820
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 396, 456
DpnI GATC 3 cut(s) 8, 132, 474
DpnII GATC 3 cut(s) 6, 130, 472
DraI TTTAAA 1 cut(s) 1012
DraIII CACNNNGTG 1 cut(s) 193
DriI GACNNNNNGTC 1 cut(s) 1190
Eam1104I CTCTTC 2 cut(s) 737, 908
Eam1105I GACNNNNNGTC 1 cut(s) 1190
EarI CTCTTC 2 cut(s) 737, 908
EciI GGCGGA 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 1200
Eco147I AGGCCT 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 711
Eco57I CTGAAG 1 cut(s) 535
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 1200
ErhI CCWWGG 1 cut(s) 1200
FaeI CATG 8 cut(s) 194, 224, 239, 381, 610, 686, 713, 823
FatI CATG 8 cut(s) 190, 220, 235, 377, 606, 682, 709, 819
FauI CCCGC 3 cut(s) 18, 655, 959
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 2 cut(s) 279, 912
Fnu4HI GCNGC 7 cut(s) 39, 81, 163, 629, 856, 867, 1029
FokI GGATG 4 cut(s) 45, 287, 369, 944
Fsp4HI GCNGC 7 cut(s) 39, 81, 163, 629, 856, 867, 1029
FspI TGCGCA 2 cut(s) 751, 1084
GlaI GCGC 2 cut(s) 751, 1084
GluI GCNGC 7 cut(s) 39, 81, 163, 629, 856, 867, 1029
GsuI CTGGAG 1 cut(s) 585
HaeIII GGCC 2 cut(s) 319, 1147
HapII CCGG 3 cut(s) 438, 916, 990
HgaI GACGC 1 cut(s) 872
HhaI GCGC 2 cut(s) 752, 1085
Hin1I GRCGYC 1 cut(s) 864
Hin1II CATG 8 cut(s) 194, 224, 239, 381, 610, 686, 713, 823
Hin6I GCGC 2 cut(s) 750, 1083
HinP1I GCGC 2 cut(s) 750, 1083
HincII GTYRAC 3 cut(s) 879, 913, 1207
HindII GTYRAC 3 cut(s) 879, 913, 1207
HinfI GANTC 7 cut(s) 205, 326, 460, 742, 875, 1076, 1228
HpaII CCGG 3 cut(s) 438, 916, 990
HphI GGTGA 4 cut(s) 479, 759, 784, 1085
Hpy166II GTNNAC 5 cut(s) 280, 879, 913, 1184, 1207
Hpy188I TCNGA 3 cut(s) 459, 604, 943
Hpy188III TCNNGA 8 cut(s) 221, 257, 269, 323, 330, 564, 710, 832
Hpy8I GTNNAC 5 cut(s) 280, 879, 913, 1184, 1207
Hpy99I CGWCG 3 cut(s) 74, 275, 336
HpyAV CCTTC 5 cut(s) 146, 167, 361, 736, 838
HpyCH4III ACNGT 5 cut(s) 103, 374, 391, 695, 938
HpyCH4IV ACGT 3 cut(s) 72, 432, 963
HpyCH4V TGCA 7 cut(s) 38, 80, 128, 377, 677, 1028, 1156
HpyF10VI GCNNNNNNNGC 4 cut(s) 518, 668, 1034, 1153
HpyF3I CTNAG 2 cut(s) 396, 456
HpySE526I ACGT 3 cut(s) 72, 432, 963
Hsp92I GRCGYC 1 cut(s) 864
Hsp92II CATG 8 cut(s) 194, 224, 239, 381, 610, 686, 713, 823
HspAI GCGC 2 cut(s) 750, 1083
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 6, 130, 472
Lsp1109I GCAGC 5 cut(s) 50, 92, 174, 867, 1040
LweI GCATC 3 cut(s) 391, 589, 1015
MaeII ACGT 3 cut(s) 72, 432, 963
MaeIII GTNAC 2 cut(s) 391, 419
MalI GATC 3 cut(s) 8, 132, 474
MboI GATC 3 cut(s) 6, 130, 472
MboII GAAGA 4 cut(s) 77, 724, 895, 1138
MfeI CAATTG 1 cut(s) 1141
MflI RGATCY 1 cut(s) 130
MluCI AATT 6 cut(s) 16, 86, 115, 760, 1020, 1141
MlyI GAGTC 2 cut(s) 454, 884
MseI TTAA 5 cut(s) 114, 759, 788, 849, 1011
MslI CAYNNNNRTG 1 cut(s) 818
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 3 cut(s) 438, 916, 990
MspR9I CCNGG 3 cut(s) 438, 771, 990
MunI CAATTG 1 cut(s) 1141
MvaI CCWGG 1 cut(s) 771
MvnI CGCG 2 cut(s) 662, 869
MwoI GCNNNNNNNGC 4 cut(s) 518, 668, 1034, 1153
NciI CCSGG 2 cut(s) 438, 990
NdeII GATC 3 cut(s) 6, 130, 472
NlaIII CATG 8 cut(s) 194, 224, 239, 381, 610, 686, 713, 823
NlaIV GGNNCC 2 cut(s) 627, 775
NmuCI GTSAC 1 cut(s) 391
NsbI TGCGCA 2 cut(s) 751, 1084
NspI RCATGY 1 cut(s) 610
PagI TCATGA 2 cut(s) 220, 709
PceI AGGCCT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 4 cut(s) 11, 66, 429, 1177
PfeI GAWTC 5 cut(s) 205, 326, 742, 1076, 1228
PflFI GACNNNGTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 915
PkrI GCNGC 7 cut(s) 40, 82, 164, 630, 857, 868, 1030
PleI GAGTC 2 cut(s) 454, 883
PpsI GAGTC 2 cut(s) 454, 883
PshBI ATTAAT 1 cut(s) 759
PsiI TTATAA 1 cut(s) 929
Psp6I CCWGG 1 cut(s) 769
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 2 cut(s) 627, 775
PspPI GGNCC 1 cut(s) 1146
PsuI RGATCY 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 818
SalI GTCGAC 1 cut(s) 911
SaqAI TTAA 5 cut(s) 114, 759, 788, 849, 1011
SatI GCNGC 7 cut(s) 39, 81, 163, 629, 856, 867, 1029
Sau3AI GATC 3 cut(s) 6, 130, 472
Sau96I GGNCC 1 cut(s) 1146
SchI GAGTC 2 cut(s) 454, 884
ScrFI CCNGG 3 cut(s) 438, 771, 990
SfaNI GCATC 3 cut(s) 391, 589, 1015
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
Sse9I AATT 6 cut(s) 16, 86, 115, 760, 1020, 1141
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 7 cut(s) 11, 199, 629, 662, 842, 867, 952
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 3 cut(s) 436, 769, 988
StyI CCWWGG 1 cut(s) 1200
TaaI ACNGT 5 cut(s) 103, 374, 391, 695, 938
TaiI ACGT 3 cut(s) 75, 435, 966
TaqI TCGA 8 cut(s) 5, 60, 150, 369, 572, 912, 1212, 1226
TaqII GACCGA 1 cut(s) 525
TasI AATT 6 cut(s) 16, 86, 115, 760, 1020, 1141
TatI WGTACW 1 cut(s) 153
TauI GCSGC 2 cut(s) 631, 869
TfiI GAWTC 5 cut(s) 205, 326, 742, 1076, 1228
Tru1I TTAA 5 cut(s) 114, 759, 788, 849, 1011
Tru9I TTAA 5 cut(s) 114, 759, 788, 849, 1011
TscAI CASTG 3 cut(s) 172, 379, 400
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 5 cut(s) 38, 80, 162, 855, 1028
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 5 cut(s) 78, 343, 735, 906, 1068
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 3 cut(s) 172, 379, 400
Tth111I GACNNNGTC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 1 cut(s) 16
XceI RCATGY 1 cut(s) 610
XmiI GTMKAC 2 cut(s) 279, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.