RchiOBHm_Chr6g0270561

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
28420625 .. 28423330
2706 bp
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UTR
Exon/CDS
Intron
PRQ24274

Sequence Viewer

Length: 168 bp
ATGGACCCAGCTGCAACAAATTTGTTGGTTGGCAAAATTATTGGCATTCTTGAGAACGAAGCATCCTTCACTGCCGGGATTCATGACCAAGTTGATGAGATTAAGCTGGATCTGGACAAAAGGCACAGGTGGAAGGCGAGTACACACATACATGTAGTGGGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

55

Amino Acids

6.06

Weight (kDa)

6.0

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 151
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 2 cut(s) 11, 106
AluI AGCT 2 cut(s) 11, 106
AlwI GGATC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 4
BcnI CCSGG 1 cut(s) 76
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 75
BsmI GAATGC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 109
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 117
BssMI GATC 1 cut(s) 109
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 83, 152
CviJI RGCY 2 cut(s) 11, 106
CviKI_1 RGCY 2 cut(s) 11, 106
CviQI GTAC 1 cut(s) 141
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 2 cut(s) 86, 155
FaiI YATR 3 cut(s) 84, 149, 153
FatI CATG 2 cut(s) 82, 151
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 11
HapII CCGG 1 cut(s) 75
Hin1II CATG 2 cut(s) 86, 155
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 50, 83, 113
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 76, 127
HpyCH4V TGCA 1 cut(s) 14
Hsp92II CATG 2 cut(s) 86, 155
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 21, 88, 92, 98, 112
LweI GCATC 1 cut(s) 71
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MflI RGATCY 1 cut(s) 109
MluCI AATT 2 cut(s) 19, 36
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 45
NciI CCSGG 1 cut(s) 76
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 86, 155
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 155
PagI TCATGA 1 cut(s) 82
PciI ACATGT 1 cut(s) 151
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 13
PscI ACATGT 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 76
SetI ASST 3 cut(s) 13, 108, 131
SfaNI GCATC 1 cut(s) 71
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 2 cut(s) 19, 36
StyD4I CCNGG 1 cut(s) 74
TasI AATT 2 cut(s) 19, 36
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.