Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006386

Physical Location & Seq

Genomic Coordinates Reverse (-)

30359117 .. 30392722

Gene Structure 33606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG177900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTTCGAACCCAGACCTTGCACATAAATTGTAATTACGAATATTATTGGCCTGATTTGGGGTCCTATTACGACGGAATGGATTCAAGTGAAGAATGTGGTGTGCTTGCTGAGACCATGTTTTACATTCCAGCTAAAAACCGAGCTAAAGATTGTGGAGGGTTGCAGAGCGAATCAAGAAGAGTAGTACATGGTGGAGAGATGAGTTCAGCCTTGGCAACAGCGGGATCAATGTATATGATTGAAGGTGAGAAGGGAGTGAGTCATGGAAATAAGGCTCAACTTTTCATTCACAAGGCATATATGGCCCCAGCTGCAACAAATTTGTTGGTTGGCAAAATTGTTGGCATTCTTGAGAACGAAGCATCCTTCACTGCCGGGATTCATGACCAAGTTGATGAGATTAAGCTGGATCTGGAGAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005623 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0044237 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

142

Amino Acids

15.66

Weight (kDa)

5.3

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14914 FvH4_3g26380
prunus_persica	Prupe.6G199600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0117641 RchiOBHm_Chr6g0270561
rosa_laevigata	RLG00000019052 RLG00000019366 RLG00000019367
rosa_multiflora	Rmu_co8019532.1_g000001 Rmu_co8259759.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033320 Rroxscaffold_2G00126300 Rroxscaffold_3G00218160 Rroxscaffold_4G00329500 Rroxscaffold_5G00359250
rosa_samantha	Rh2CG154500 Rh3AG203600 Rh3BG233400 Rh4DG365700 Rh5BG458000 Rh5CG479800 Rh6BG177900 Rh6BG223700 Rh6DG009700 Rh6DG216700 Rh7AG108700 Rh7AG109000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	235, 420
AcsI	RAATTY	1 cut(s)	322
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	87, 245
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	4 cut(s)	134, 146, 314, 409
AluI	AGCT	4 cut(s)	134, 146, 314, 409
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	235, 420
AoxI	GGCC	2 cut(s)	50, 306
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	63, 307
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	260
AsuII	TTCGAA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	63, 307
BmiI	GGNNCC	2 cut(s)	64, 309
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	379
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	310
BshFI	GGCC	2 cut(s)	52, 308
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	52, 308
Bso31I	GGTCTC	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	227, 412
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	52, 308
BspCNI	CTCAG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	64, 309
BspPI	GGATC	2 cut(s)	235, 420
BspT104I	TTCGAA	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	227, 412
BssT1I	CCWWGG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	2 cut(s)	230, 415
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	227, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 314
BstSCI	CCNGG	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	52, 308
BtsCI	GGATG	1 cut(s)	365
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	108
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	63, 307
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	4 cut(s)	118, 191, 266, 386
CviJI	RGCY	8 cut(s)	52, 134, 146, 212, 278, 308, 314, 409
CviKI_1	RGCY	8 cut(s)	52, 134, 146, 212, 278, 308, 314, 409
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	229, 414
DpnII	GATC	2 cut(s)	227, 412
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	4 cut(s)	121, 194, 269, 389
FatI	CATG	4 cut(s)	117, 190, 265, 385
FauI	CCCGC	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
GsaI	CCCAGC	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	52, 308
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	4 cut(s)	121, 194, 269, 389
HinfI	GANTC	4 cut(s)	83, 173, 262, 382
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	260
Hpy188III	TCNNGA	4 cut(s)	177, 353, 386, 416
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	239, 247, 379
HpyCH4V	TGCA	3 cut(s)	22, 166, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 314
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	121, 194, 269, 389
Kzo9I	GATC	2 cut(s)	227, 412
LpnPI	CCDG	7 cut(s)	26, 66, 144, 324, 391, 395, 401
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	374
MalI	GATC	2 cut(s)	229, 414
MboI	GATC	2 cut(s)	227, 412
MboII	GAAGA	2 cut(s)	104, 192
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	4 cut(s)	28, 34, 322, 339
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	82
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	224, 314
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	379
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	305, 314
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	2 cut(s)	227, 412
NlaIII	CATG	4 cut(s)	121, 194, 269, 389
NlaIV	GGNNCC	2 cut(s)	64, 309
NspV	TTCGAA	1 cut(s)	7
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	3 cut(s)	83, 173, 382
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
PpuMI	RGGWCCY	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	64, 309
PspPI	GGNCC	2 cut(s)	63, 307
PspPPI	RGGWCCY	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	227, 412
Sau96I	GGNCC	2 cut(s)	63, 307
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	7 cut(s)	20, 136, 148, 250, 316, 411, 428
SfaNI	GCATC	1 cut(s)	374
SfuI	TTCGAA	1 cut(s)	7
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	28, 34, 322, 339
SsiI	CCGC	1 cut(s)	224
SspI	AATATT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	7
TasI	AATT	4 cut(s)	28, 34, 322, 339
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	3 cut(s)	83, 173, 382
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	277, 374
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.