Rh2CG154500

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006386
Physical Location & Seq
Forward (+)
13418930 .. 13419295
366 bp
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UTR
Exon/CDS
Intron
Rh2CG154500.1

Sequence Viewer

Length: 366 bp
ATGGCCTCAGCTCCAACAGACCTCTTGATTGGCAAAATTGTGAGCATTCTAGAGGGCGAAGCATCCTCCGTAGCCGATGTTCGTGATGAAGTTGATGAGATTAAGCTGGAGCTTGAGAGCATGAAGTCTTTCCTAGAGGATACAGAGTGGAAGAAAGCAAGTACACAAACAAAGAAAACGTGGATTGCAAACGTGACAAACTTGGCCTGCGATGTTGAAGATATCATTGATGAATCCATGTATCGCATGAATGAGAAGGAAAGTGGCGGTCGATTTGCAAGGTTTCTCCAAAAACCATTCACGTCCCAAAAAACCTCTGGTATAAGGGTCGAATTGCTAACAAGTTACAGAAAATTATTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

121

Amino Acids

13.69

Weight (kDa)

4.96

Isoelectric Point (pI)

26.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 91 8.4e-21 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 1 cut(s) 218
AjiI CACGTC 1 cut(s) 303
AluBI AGCT 3 cut(s) 11, 106, 112
AluI AGCT 3 cut(s) 11, 106, 112
AoxI GGCC 2 cut(s) 3, 204
Asp700I GAANNNNTTC 1 cut(s) 128
BbvCI CCTCAGC 1 cut(s) 7
BciVI GTATCC 1 cut(s) 133
BfaI CTAG 2 cut(s) 50, 134
BfuI GTATCC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 303
BmsI GCATC 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 134
BseGI GGATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 5, 206
BsiEI CGRYCG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 2 cut(s) 5, 206
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 5, 206
BspCNI CTCAG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 62
BstMCI CGRYCG 1 cut(s) 271
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 5, 206
BtgZI GCGATG 1 cut(s) 225
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 162
CviAII CATG 3 cut(s) 121, 238, 247
CviJI RGCY 6 cut(s) 5, 11, 74, 106, 112, 206
CviKI_1 RGCY 6 cut(s) 5, 11, 74, 106, 112, 206
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 1 cut(s) 7
Eco32I GATATC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 223
FaeI CATG 3 cut(s) 124, 241, 250
FaiI YATR 4 cut(s) 122, 239, 248, 323
FaqI GGGAC 1 cut(s) 289
FatI CATG 3 cut(s) 120, 237, 246
FokI GGATG 1 cut(s) 49
FspBI CTAG 2 cut(s) 50, 134
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 5, 206
Hin1II CATG 3 cut(s) 124, 241, 250
HinfI GANTC 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 164
Hpy188III TCNNGA 3 cut(s) 25, 50, 83
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 250
HpyCH4IV ACGT 3 cut(s) 179, 192, 302
HpyCH4V TGCA 3 cut(s) 188, 278, 361
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 3 cut(s) 179, 192, 302
Hsp92II CATG 3 cut(s) 124, 241, 250
LmnI GCTCC 2 cut(s) 16, 109
LpnPI CCDG 3 cut(s) 92, 220, 303
LweI GCATC 1 cut(s) 71
MaeI CTAG 2 cut(s) 50, 134
MaeII ACGT 3 cut(s) 179, 192, 302
MaeIII GTNAC 2 cut(s) 193, 344
MboII GAAGA 2 cut(s) 163, 230
MluCI AATT 3 cut(s) 36, 332, 353
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 6 cut(s) 16, 32, 46, 76, 130, 325
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 45
NlaIII CATG 3 cut(s) 124, 241, 250
NmuCI GTSAC 1 cut(s) 193
PctI GAATGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 233
PsrI GAACNNNNNNTAC 2 cut(s) 63, 95
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 102
SetI ASST 9 cut(s) 13, 24, 108, 114, 182, 195, 284, 305, 317
SfaNI GCATC 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 3 cut(s) 36, 332, 353
SsiI CCGC 1 cut(s) 267
SspMI CTAG 2 cut(s) 50, 134
TaiI ACGT 3 cut(s) 182, 195, 305
TaqI TCGA 2 cut(s) 271, 330
TasI AATT 3 cut(s) 36, 332, 353
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 4 cut(s) 102, 137, 246, 263
TspGWI ACGGA 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 50, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.