Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006386

Physical Location & Seq

Genomic Coordinates Forward (+)

21798779 .. 21799048

Gene Structure 270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG233400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTTCACCGGTACCCATTTAGGCCGGTCTCCAGCAAGGCTGATCGACATGGGCCTTCAATCACCTTCCAACGGCAAATTTATCACCGGCATCAAAGCTGCCTGTAGTGACCCAAGTCACAAAGAAGGCCAAAAAATTGACCCAGAAACTGACCTAGGCAAACTGGTTGCCAGCTCGGCCCAAGGCATCTCGTGGGTGACGTCATGGTGTTCTGTGCAGGGAGAGATGCGAGAAGCAACTCGTGTGAGGAACAAAGCTGCTGTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.5

Weight (kDa)

9.18

Isoelectric Point (pI)

40.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14914 FvH4_3g26380
prunus_persica	Prupe.6G199600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0117641 RchiOBHm_Chr6g0270561
rosa_laevigata	RLG00000019052 RLG00000019366 RLG00000019367
rosa_multiflora	Rmu_co8019532.1_g000001 Rmu_co8259759.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033320 Rroxscaffold_2G00126300 Rroxscaffold_3G00218160 Rroxscaffold_4G00329500 Rroxscaffold_5G00359250
rosa_samantha	Rh2CG154500 Rh3AG203600 Rh3BG233400 Rh4DG365700 Rh5BG458000 Rh5CG479800 Rh6BG177900 Rh6BG223700 Rh6DG009700 Rh6DG216700 Rh7AG108700 Rh7AG109000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	3 cut(s)	98, 174, 257
AluI	AGCT	3 cut(s)	98, 174, 257
Alw26I	GTCTC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	4 cut(s)	22, 52, 127, 177
ApeKI	GCWGC	2 cut(s)	98, 257
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	1 cut(s)	246
AsiGI	ACCGGT	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	52, 178
AsuHPI	GGTGA	3 cut(s)	54, 76, 208
AvrII	CCTAGG	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	11
BauI	CACGAG	2 cut(s)	190, 240
BbvI	GCAGC	2 cut(s)	85, 244
BceAI	ACGGC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	2 cut(s)	99, 258
BlnI	CCTAGG	1 cut(s)	154
BlsI	GCNGC	2 cut(s)	100, 259
BmgT120I	GGNCC	2 cut(s)	52, 178
BmiI	GGNNCC	1 cut(s)	13
BmsI	GCATC	3 cut(s)	99, 195, 216
BoxI	GACNNNNGTC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	200
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	154, 181
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	3 cut(s)	8, 24, 86
Bse1I	ACTGG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	154, 181
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	85, 244
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	4 cut(s)	24, 54, 129, 179
BshNI	GGYRCC	1 cut(s)	11
BshTI	ACCGGT	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	9, 25, 87
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	24, 54, 129, 179
Bso31I	GGTCTC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	42
BspANI	GGCC	4 cut(s)	24, 54, 129, 179
BspLI	GGNNCC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	33
BsrFI	RCCGGY	3 cut(s)	8, 24, 86
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	3 cut(s)	8, 24, 86
BssECI	CCNNGG	2 cut(s)	154, 181
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	1 cut(s)	200
BssSI	CACGAG	2 cut(s)	190, 240
BssT1I	CCWWGG	2 cut(s)	154, 181
Bst2BI	CACGAG	2 cut(s)	190, 240
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	85, 244
BsuRI	GGCC	4 cut(s)	24, 54, 129, 179
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	149
Cfr10I	RCCGGY	3 cut(s)	8, 24, 86
Cfr13I	GGNCC	2 cut(s)	52, 178
Csp6I	GTAC	1 cut(s)	12
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	2 cut(s)	49, 204
CviJI	RGCY	8 cut(s)	24, 40, 54, 98, 129, 174, 179, 257
CviKI_1	RGCY	8 cut(s)	24, 40, 54, 98, 129, 174, 179, 257
CviQI	GTAC	1 cut(s)	12
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco130I	CCWWGG	2 cut(s)	154, 181
Eco31I	GGTCTC	1 cut(s)	33
EcoT14I	CCWWGG	2 cut(s)	154, 181
ErhI	CCWWGG	2 cut(s)	154, 181
FaeI	CATG	2 cut(s)	52, 207
FaiI	YATR	2 cut(s)	50, 205
FatI	CATG	2 cut(s)	48, 203
Fnu4HI	GCNGC	2 cut(s)	99, 258
Fsp4HI	GCNGC	2 cut(s)	99, 258
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	99, 258
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	24, 54, 129, 179
HapII	CCGG	3 cut(s)	9, 25, 87
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	52, 207
HpaII	CCGG	3 cut(s)	9, 25, 87
HphI	GGTGA	3 cut(s)	54, 76, 208
Hpy166II	GTNNAC	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	65, 75, 119
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	200
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	52, 207
KpnI	GGTACC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	9 cut(s)	22, 38, 45, 100, 115, 149, 156, 184, 203
Lsp1109I	GCAGC	2 cut(s)	85, 244
LweI	GCATC	3 cut(s)	99, 195, 216
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	3 cut(s)	107, 116, 196
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MluCI	AATT	2 cut(s)	77, 135
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	1 cut(s)	240
MspI	CCGG	3 cut(s)	9, 25, 87
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	52, 207
NlaIV	GGNNCC	1 cut(s)	13
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	3 cut(s)	107, 116, 196
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	100, 259
PshAI	GACNNNNGTC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	52, 178
PstNI	CAGNNNCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SatI	GCNGC	2 cut(s)	99, 258
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	2 cut(s)	52, 178
SetI	ASST	6 cut(s)	67, 100, 156, 176, 203, 259
SfaNI	GCATC	3 cut(s)	99, 195, 216
SfcI	CTRYAG	1 cut(s)	103
Sse9I	AATT	2 cut(s)	77, 135
SspMI	CTAG	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	154, 181
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	77, 135
TseFI	GTSAC	3 cut(s)	107, 116, 196
TseI	GCWGC	2 cut(s)	98, 257
Tsp45I	GTSAC	3 cut(s)	107, 116, 196
XapI	RAATTY	1 cut(s)	77
XmaJI	CCTAGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	155
ZraI	GACGTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.