Rh5CG479800

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
66923825 .. 66930592
6768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG479800.1

Sequence Viewer

Length: 312 bp
ATGGCCCCAACTGCAACAAATTTGTTGGTTGGAAAAATTGTTGGCATTCTTGAGAACGAAGCATCCTTCACTGCCGGGATTCATGATCAAGTTGATGAGATTAAGATGGATCTGGACAAAAGTTCTTGGAGTGGATTTGGAAAAGGTGGCAGAAATAGCAACAACATCATCTACTTTGAAAGAGGAAGGGCTCAAGCTGCATTTCAAAATAGCAGTAAGAATAGCCTCTTTTTTGACAGGGGACATATCTCTAGCACTTCCCAGCTTTGTGCTCAATACAACAGCAGAGGAATATCAATTGCCCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.22

Weight (kDa)

8.89

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 19
AgsI TTSAA 2 cut(s) 179, 206
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 2 cut(s) 197, 265
AluI AGCT 2 cut(s) 197, 265
Alw21I GWGCWC 1 cut(s) 274
AlwI GGATC 1 cut(s) 117
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 76
BanII GRGCYC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 100
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 76
BfaI CTAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 71, 177
BpuMI CCSGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 193, 274
Bsp143I GATC 2 cut(s) 85, 109
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 117
BssMI GATC 2 cut(s) 85, 109
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 2 cut(s) 88, 112
BstMBI GATC 2 cut(s) 85, 109
BstMWI GCNNNNNNNGC 3 cut(s) 11, 156, 197
BstSCI CCNGG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 83
CviJI RGCY 5 cut(s) 5, 191, 197, 225, 265
CviKI_1 RGCY 5 cut(s) 5, 191, 197, 225, 265
DpnI GATC 2 cut(s) 87, 111
DpnII GATC 2 cut(s) 85, 109
Eco24I GRGCYC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 1 cut(s) 86
FaiI YATR 2 cut(s) 84, 246
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 252
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 265
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 50, 83, 113
HpyAV CCTTC 2 cut(s) 76, 180
HpyCH4V TGCA 2 cut(s) 14, 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 156, 197
Hsp92II CATG 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 109
LpnPI CCDG 4 cut(s) 88, 98, 223, 275
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 252
MalI GATC 2 cut(s) 87, 111
MboI GATC 2 cut(s) 85, 109
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 193, 274
MluCI AATT 3 cut(s) 19, 36, 297
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 3 cut(s) 176, 236, 281
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 11, 156, 197
NciI CCSGG 1 cut(s) 76
NdeII GATC 2 cut(s) 85, 109
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 82
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 109
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 85, 109
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 2 cut(s) 193, 274
SetI ASST 3 cut(s) 148, 199, 267
SfaNI GCATC 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 50, 192
SmoI CTYRAG 2 cut(s) 50, 192
Sse9I AATT 3 cut(s) 19, 36, 297
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 74
TasI AATT 3 cut(s) 19, 36, 297
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 19
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.