Rh6DG216700

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006386
Physical Location & Seq
Forward (+)
38692928 .. 38700279
7352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG216700.1

Sequence Viewer

Length: 345 bp
ATGGCCTCAGCTGCAACAGAGTTCTTGATTGGCAAAATTGAGGAAGTTCTTGAGAAGGAAGCATCCTCCATCGCAGGTGTTCGTGATCAAGTGGATGAGATTAAGCAGGAGCTGATAAGCATGAAATCCTTCCTAGAGGATGCTGAGGGAAAGAAAATAGACACGGAAGGAGAGAAGGAATGGGTAGCAAGCATTAGAAACTCTGTCTATGATGTTGAAGATATTATTGATGAATTCATGTACCGCATGCATGAGCAGCGAAATGGAGGTCGACTTGCAAGTTATGTTTTTTTTGTTACATCCTTCTCCACTATCAATGGCCAAGAGCATATAAACCATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

114

Amino Acids

12.99

Weight (kDa)

4.58

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 7 - 88 2.6e-25 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 271
AciI CCGC 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 2 cut(s) 11, 112
AluI AGCT 2 cut(s) 11, 112
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 2 cut(s) 3, 319
ApeKI GCWGC 2 cut(s) 11, 256
ApoI RAATTY 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
Asp700I GAANNNNTTC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 321
BbvCI CCTCAGC 2 cut(s) 7, 144
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 77
BclI TGATCA 1 cut(s) 85
BfaI CTAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 2 cut(s) 12, 257
BlsI GCNGC 2 cut(s) 13, 258
BmsI GCATC 2 cut(s) 71, 130
Bpu10I CCTNAGC 2 cut(s) 7, 144
BpuEI CTTGAG 1 cut(s) 71
BseGI GGATG 4 cut(s) 62, 100, 145, 299
BseMII CTCAG 2 cut(s) 21, 135
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 2 cut(s) 5, 321
BsnI GGCC 2 cut(s) 5, 321
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 244
BspANI GGCC 2 cut(s) 5, 321
BspCNI CTCAG 2 cut(s) 20, 136
BspMI ACCTGC 1 cut(s) 65
BssMI GATC 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 190, 248
BstDEI CTNAG 2 cut(s) 7, 144
BstF5I GGATG 4 cut(s) 62, 100, 145, 299
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 11, 256
BstNSI RCATGY 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 5, 321
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 4 cut(s) 62, 100, 145, 299
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 190, 248
CaiI CAGNNNCTG 1 cut(s) 112
Csp6I GTAC 1 cut(s) 241
CviAII CATG 5 cut(s) 121, 238, 247, 251, 338
CviJI RGCY 4 cut(s) 5, 11, 112, 321
CviKI_1 RGCY 4 cut(s) 5, 11, 112, 321
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 7, 144
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 252
FaeI CATG 5 cut(s) 124, 241, 250, 254, 341
FaiI YATR 9 cut(s) 122, 210, 239, 248, 252, 285, 330, 332, 339
FatI CATG 5 cut(s) 120, 237, 246, 250, 337
FbaI TGATCA 1 cut(s) 85
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 12, 257
FokI GGATG 4 cut(s) 49, 107, 152, 286
Fsp4HI GCNGC 2 cut(s) 12, 257
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 12, 257
HaeIII GGCC 2 cut(s) 5, 321
Hin1II CATG 5 cut(s) 124, 241, 250, 254, 341
HincII GTYRAC 1 cut(s) 272
HindII GTYRAC 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 272
Hpy188III TCNNGA 3 cut(s) 25, 50, 83
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 5 cut(s) 49, 139, 161, 169, 313
HpyCH4V TGCA 3 cut(s) 14, 250, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 256
HpyF3I CTNAG 2 cut(s) 7, 144
Hsp92II CATG 5 cut(s) 124, 241, 250, 254, 341
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 60, 92
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 2 cut(s) 71, 130
MaeI CTAG 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 2 cut(s) 36, 233
MluNI TGGCCA 1 cut(s) 321
MnlI CCTC 6 cut(s) 16, 34, 76, 130, 139, 260
Mox20I TGGCCA 1 cut(s) 321
Mph1103I ATGCAT 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 128
MscI TGGCCA 1 cut(s) 321
MseI TTAA 1 cut(s) 102
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 11, 256
NdeII GATC 1 cut(s) 85
NlaIII CATG 5 cut(s) 124, 241, 250, 254, 341
NsiI ATGCAT 1 cut(s) 252
NspI RCATGY 1 cut(s) 250
PaeI GCATGC 1 cut(s) 250
PaqCI CACCTGC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 13, 258
PstNI CAGNNNCTG 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SalI GTCGAC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 2 cut(s) 12, 257
Sau3AI GATC 1 cut(s) 85
SetI ASST 4 cut(s) 13, 79, 114, 271
SfaNI GCATC 2 cut(s) 71, 130
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SphI GCATGC 1 cut(s) 250
Sse9I AATT 2 cut(s) 36, 233
SsiI CCGC 1 cut(s) 244
SspMI CTAG 1 cut(s) 134
TaqI TCGA 1 cut(s) 271
TasI AATT 2 cut(s) 36, 233
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 2 cut(s) 11, 256
TspDTI ATGAA 3 cut(s) 137, 226, 246
TspGWI ACGGA 1 cut(s) 179
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.