RLG00000019367

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006386
Physical Location & Seq
Forward (+)
50907682 .. 50909193
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019367

Sequence Viewer

Length: 312 bp
ATGGCCCCATCTGCAACAAAGTTGTTGGTTGGCAAAATTGTTGGCATTCTTGAGAACGAAGCATCCTTCACTGCCGGGATTCATGATCAAGTTGATGAGATTAAGCTGGATCTGGACAAAAGTTCTTGGAGTGGATTTGGAAAAGGTGGCAGAAATAGCAACAACATCATTTGCTTTGAAAGAGGAAGAGCTCAAGCTGCGTTTCAAAATAGCAGTAAGAATAGCCTCTTTTTTGACAGGGGACATATCTCTAGCACTTCCCAGCTTTGTGCTCAATACAACAGCAGAGGAATATCAATTGCCCAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

104

Amino Acids

11.12

Weight (kDa)

8.71

Isoelectric Point (pI)

23.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 117
AgsI TTSAA 2 cut(s) 179, 206
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 106, 191, 197, 265
AluI AGCT 4 cut(s) 106, 191, 197, 265
Alw21I GWGCWC 2 cut(s) 193, 274
AlwI GGATC 1 cut(s) 117
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 76
BanII GRGCYC 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 193, 274
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 16
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 76
BfaI CTAG 2 cut(s) 252, 310
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 71, 177
BpuMI CCSGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 193, 274
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 193, 274
Bsp143I GATC 2 cut(s) 85, 109
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 117
BspQI GCTCTTC 1 cut(s) 181
BssMI GATC 2 cut(s) 85, 109
Bst6I CTCTTC 1 cut(s) 181
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 2 cut(s) 88, 112
BstMBI GATC 2 cut(s) 85, 109
BstMWI GCNNNNNNNGC 3 cut(s) 11, 156, 197
BstSCI CCNGG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 83
CviJI RGCY 6 cut(s) 5, 106, 191, 197, 225, 265
CviKI_1 RGCY 6 cut(s) 5, 106, 191, 197, 225, 265
DpnI GATC 2 cut(s) 87, 111
DpnII GATC 2 cut(s) 85, 109
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 1 cut(s) 86
FaiI YATR 2 cut(s) 84, 246
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 252, 310
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 265
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 50, 83, 113
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 156, 197
Hsp92II CATG 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 109
LguI GCTCTTC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 88, 92, 98, 223, 275
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 71
MaeI CTAG 2 cut(s) 252, 310
MalI GATC 2 cut(s) 87, 111
MboI GATC 2 cut(s) 85, 109
MboII GAAGA 1 cut(s) 198
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 193, 274
MluCI AATT 2 cut(s) 36, 297
MnlI CCTC 3 cut(s) 176, 236, 281
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 76
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 11, 156, 197
NciI CCSGG 1 cut(s) 76
NdeII GATC 2 cut(s) 85, 109
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 181
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 109
SacI GAGCTC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 85, 109
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 2 cut(s) 193, 274
SetI ASST 5 cut(s) 108, 148, 193, 199, 267
SfaNI GCATC 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 50, 192
SmoI CTYRAG 2 cut(s) 50, 192
Sse9I AATT 2 cut(s) 36, 297
SspMI CTAG 2 cut(s) 252, 310
SstI GAGCTC 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 74
TasI AATT 2 cut(s) 36, 297
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 1 cut(s) 76
XspI CTAG 2 cut(s) 252, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.