Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006386

Physical Location & Seq

Genomic Coordinates Forward (+)

62830776 .. 62832288

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGCCCCAGCTGCAACAAATTTGTTGGTTGGCAAAATTGTTGGCATTCTTGAGAACGAAGCATCCTTCACTGCCGGGATTCATGATCAATTTGATGAGATTAAGCTGGATTTGGACAAAAGGCACAGGTGGAAGGCGAGTGCACACATACATGTAGTGGGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

55

Amino Acids

6.02

Weight (kDa)

6.38

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14914 FvH4_3g26380
prunus_persica	Prupe.6G199600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0117641 RchiOBHm_Chr6g0270561
rosa_laevigata	RLG00000019052 RLG00000019366 RLG00000019367
rosa_multiflora	Rmu_co8019532.1_g000001 Rmu_co8259759.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033320 Rroxscaffold_2G00126300 Rroxscaffold_3G00218160 Rroxscaffold_4G00329500 Rroxscaffold_5G00359250
rosa_samantha	Rh2CG154500 Rh3AG203600 Rh3BG233400 Rh4DG365700 Rh5BG458000 Rh5CG479800 Rh6BG177900 Rh6BG223700 Rh6DG009700 Rh6DG216700 Rh7AG108700 Rh7AG109000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	151
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	2 cut(s)	11, 106
AluI	AGCT	2 cut(s)	11, 106
Alw21I	GWGCWC	1 cut(s)	145
Alw44I	GTGCAC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	76
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	6
BssMI	GATC	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
CciI	TCATGA	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	2 cut(s)	83, 152
CviJI	RGCY	3 cut(s)	5, 11, 106
CviKI_1	RGCY	3 cut(s)	5, 11, 106
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
FaeI	CATG	2 cut(s)	86, 155
FaiI	YATR	3 cut(s)	84, 149, 153
FatI	CATG	2 cut(s)	82, 151
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	86, 155
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	50, 83
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	76, 127
HpyCH4V	TGCA	2 cut(s)	14, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	86, 155
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	21, 88, 92, 112
LweI	GCATC	1 cut(s)	71
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	3 cut(s)	19, 36, 89
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	76
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	86, 155
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	155
PagI	TCATGA	1 cut(s)	82
PciI	ACATGT	1 cut(s)	151
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	3 cut(s)	13, 108, 131
SfaNI	GCATC	1 cut(s)	71
SgeI	CNNG	9 cut(s)	20, 62, 87, 88, 95, 119, 139, 150, 164
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	19, 36, 89
StyD4I	CCNGG	1 cut(s)	74
TasI	AATT	3 cut(s)	19, 36, 89
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	76
VneI	GTGCAC	1 cut(s)	141
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.