RLG00000019052

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006386
Physical Location & Seq
Reverse (-)
45612204 .. 45612835
632 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019052

Sequence Viewer

Length: 552 bp
ATGGCGTCAGCTGCAACAGATCTCTTGATTGGTAAAATTCTAGCCATTCTTGAGAATGAAGCATCCTCCATAGCGGGTGTTCGTGATCAAGTTGATGAGATCAAGCAGGACCTTGCAAGCATGAAATCCTTCCTGCAGGATGCTGAAGACATCATTGACGAGTTCATGTATCATATGTATCAGCAGCAAAGTAGGGGTCGTTTTGATCGCTGGCTCCAGAAAACCATTTATATCCCAATGAATACCTGGTTCAGACGTCAAATTTCTCAGAAGTTACGAAAAGTCACTAAAACAATCAAAAACATTCCAGAGAGGAACCAGAGATATGGCGTTCGTGGTGTAGAAGGAACGAGTTCTAATCATGATAGTCAGAAATGTGTGCAGAACCAAGCAGAGTCTTCTCTTTTCATTGAGGAAGATGAGCTCGTTGGGATTGAAGAGGAGAAGAGCATGTTAATACAATTGCTGATGAATGAGGAACCAGAAAATCATCTCAGTGGTCGGGACAGAAGGATCTGGGAAGACCACTCTTGTTGCCAAGAGCTTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

184

Amino Acids

21.36

Weight (kDa)

5.19

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 49 3.3e-07 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 259
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 521
AcsI RAATTY 2 cut(s) 36, 261
AcuI CTGAAG 1 cut(s) 165
AcyI GRCGYC 2 cut(s) 5, 256
AgsI TTSAA 1 cut(s) 437
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 3 cut(s) 11, 424, 544
AluI AGCT 3 cut(s) 11, 424, 544
Alw21I GWGCWC 1 cut(s) 426
AlwI GGATC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 11, 184
ApoI RAATTY 2 cut(s) 36, 261
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
Asp700I GAANNNNTTC 2 cut(s) 128, 352
AspS9I GGNCC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 426
BbsI GAAGAC 3 cut(s) 153, 390, 528
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 247
BclI TGATCA 1 cut(s) 85
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 134
BglII AGATCT 1 cut(s) 19
BisI GCNGC 2 cut(s) 12, 185
BlsI GCNGC 2 cut(s) 13, 186
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 215, 317, 480
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 71, 130
BpiI GAAGAC 3 cut(s) 153, 390, 528
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 71
BsaHI GRCGYC 2 cut(s) 5, 256
BseBI CCWGG 1 cut(s) 247
BseGI GGATG 2 cut(s) 62, 145
BseMII CTCAG 2 cut(s) 281, 508
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 426
BslFI GGGAC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 5 cut(s) 19, 85, 99, 205, 513
BspACI CCGC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 280, 507
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 215, 317, 480
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 440
BssMI GATC 5 cut(s) 19, 85, 99, 205, 513
BssNI GRCGYC 2 cut(s) 5, 256
Bst2UI CCWGG 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 432, 440
BstACI GRCGYC 2 cut(s) 5, 256
BstC8I GCNNGC 2 cut(s) 118, 212
BstDEI CTNAG 2 cut(s) 267, 494
BstF5I GGATG 2 cut(s) 62, 145
BstKTI GATC 5 cut(s) 22, 88, 102, 208, 516
BstMBI GATC 5 cut(s) 19, 85, 99, 205, 513
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 3 cut(s) 153, 390, 528
BstX2I RGATCY 2 cut(s) 19, 513
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 2 cut(s) 19, 513
BtsCI GGATG 2 cut(s) 62, 145
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 118, 212
CciI TCATGA 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 109
CsiI ACCWGGT 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 4 cut(s) 121, 166, 362, 451
CviJI RGCY 5 cut(s) 11, 44, 214, 424, 544
CviKI_1 RGCY 5 cut(s) 11, 44, 214, 424, 544
DdeI CTNAG 2 cut(s) 267, 494
DpnI GATC 5 cut(s) 21, 87, 101, 207, 515
DpnII GATC 5 cut(s) 19, 85, 99, 205, 513
Eam1104I CTCTTC 2 cut(s) 432, 440
EarI CTCTTC 2 cut(s) 432, 440
Ecl136II GAGCTC 1 cut(s) 424
Eco24I GRGCYC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 424
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 4 cut(s) 124, 169, 365, 454
FaiI YATR 9 cut(s) 71, 122, 167, 174, 176, 231, 327, 363, 452
FaqI GGGAC 1 cut(s) 518
FatI CATG 4 cut(s) 120, 165, 361, 450
FauI CCCGC 1 cut(s) 67
FauNDI CATATG 1 cut(s) 174
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 12, 185
FokI GGATG 2 cut(s) 49, 152
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 2 cut(s) 12, 185
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 12, 185
GsuI CTGGAG 1 cut(s) 200
Hin1I GRCGYC 2 cut(s) 5, 256
Hin1II CATG 4 cut(s) 124, 169, 365, 454
HinfI GANTC 1 cut(s) 395
Hpy188I TCNGA 3 cut(s) 254, 270, 372
Hpy188III TCNNGA 7 cut(s) 25, 50, 83, 217, 308, 362, 503
HpyAV CCTTC 3 cut(s) 139, 338, 504
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 14, 116, 136, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 267, 494
HpySE526I ACGT 1 cut(s) 256
Hsp92I GRCGYC 2 cut(s) 5, 256
Hsp92II CATG 4 cut(s) 124, 169, 365, 454
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 5 cut(s) 19, 85, 99, 205, 513
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 1 cut(s) 219
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 71, 130
MabI ACCWGGT 1 cut(s) 245
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 273, 283
MalI GATC 5 cut(s) 21, 87, 101, 207, 515
MboI GATC 5 cut(s) 19, 85, 99, 205, 513
MboII GAAGA 6 cut(s) 158, 390, 428, 449, 457, 533
MfeI CAATTG 1 cut(s) 461
MflI RGATCY 2 cut(s) 19, 513
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 3 cut(s) 36, 261, 461
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 5 cut(s) 76, 306, 406, 433, 469
MroXI GAANNNNTTC 2 cut(s) 128, 352
MseI TTAA 1 cut(s) 455
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 247
MunI CAATTG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 174
NdeII GATC 5 cut(s) 19, 85, 99, 205, 513
NlaIII CATG 4 cut(s) 124, 169, 365, 454
NlaIV GGNNCC 3 cut(s) 215, 317, 480
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 454
PagI TCATGA 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 440
PdmI GAANNNNTTC 2 cut(s) 128, 352
PkrI GCNGC 2 cut(s) 13, 186
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 215, 317, 480
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
PstI CTGCAG 1 cut(s) 138
PsuI RGATCY 2 cut(s) 19, 513
PvuII CAGCTG 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 495
SacI GAGCTC 1 cut(s) 426
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 2 cut(s) 12, 185
Sau3AI GATC 5 cut(s) 19, 85, 99, 205, 513
Sau96I GGNCC 1 cut(s) 109
SbfI CCTGCAGG 1 cut(s) 138
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 247
SdaI CCTGCAGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 426
SetI ASST 6 cut(s) 13, 114, 248, 259, 426, 546
SexAI ACCWGGT 1 cut(s) 245
SfaNI GCATC 2 cut(s) 71, 130
SfcI CTRYAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse8387I CCTGCAGG 1 cut(s) 138
Sse9I AATT 3 cut(s) 36, 261, 461
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 245
TaiI ACGT 1 cut(s) 259
TasI AATT 3 cut(s) 36, 261, 461
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 2 cut(s) 11, 184
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 6 cut(s) 72, 137, 154, 254, 397, 485
TspRI CASTG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 2 cut(s) 36, 261
XceI RCATGY 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 243
XmnI GAANNNNTTC 2 cut(s) 128, 352
XspI CTAG 1 cut(s) 41
ZraI GACGTC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.