Rh6DG009700

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006386
Physical Location & Seq
Forward (+)
981864 .. 982184
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG009700.1

Sequence Viewer

Length: 321 bp
ATGGCCTCAGCTGCAACAGATCTGTTGGCTGGCAAAATTGTTGGCATTCTTGAGAATGAAGCATCCTTTATTGCCGGGGTTCGTGATCAAGTTGATGAGATTAAGCTGGAGCTGATTAGCATGAAATCCTTCTTGTATGATGCTGAGGGAAAGAAAGCACGCACACAAGGAGAGGAGACGTGGGTAGCAAGCGTGAGAGATTTGGCCTATGATGTTGAAGACGTCATTGATGAATTCATGTATCATATGTATGAGCAGAAAATCGAAGGTCGATTTTCTAGGTGGCTTTACAAAACCATTGATATTCCAAAGAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

106

Amino Acids

12.14

Weight (kDa)

4.66

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 92 1.1e-22 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 222
AgsI TTSAA 1 cut(s) 218
AjiI CACGTC 1 cut(s) 180
AluBI AGCT 3 cut(s) 11, 106, 112
AluI AGCT 3 cut(s) 11, 106, 112
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 2 cut(s) 3, 204
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 225
BbvCI CCTCAGC 2 cut(s) 7, 144
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 279
BglII AGATCT 1 cut(s) 19
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 71, 130
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 128
Bpu10I CCTNAGC 2 cut(s) 7, 144
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 76
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 62
BseMII CTCAG 2 cut(s) 21, 135
BseRI GAGGAG 1 cut(s) 188
BshFI GGCC 2 cut(s) 5, 206
BsiSI CCGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 2 cut(s) 5, 206
Bsp143I GATC 2 cut(s) 19, 85
BspANI GGCC 2 cut(s) 5, 206
BspCNI CTCAG 2 cut(s) 20, 136
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 19, 85
BssNI GRCGYC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 31, 160, 190
BstDEI CTNAG 2 cut(s) 7, 144
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 2 cut(s) 22, 88
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 19, 85
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 2 cut(s) 5, 206
BtrI CACGTC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 62
Cac8I GCNNGC 3 cut(s) 31, 160, 190
CviAII CATG 2 cut(s) 121, 238
CviJI RGCY 7 cut(s) 5, 11, 29, 106, 112, 206, 286
CviKI_1 RGCY 7 cut(s) 5, 11, 29, 106, 112, 206, 286
DdeI CTNAG 2 cut(s) 7, 144
DpnI GATC 2 cut(s) 21, 87
DpnII GATC 2 cut(s) 19, 85
EcoRI GAATTC 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 124, 241
FaiI YATR 7 cut(s) 122, 138, 210, 239, 246, 248, 252
FatI CATG 2 cut(s) 120, 237
FauNDI CATATG 1 cut(s) 246
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 279
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 5, 206
HapII CCGG 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 2 cut(s) 124, 241
HinfI GANTC 1 cut(s) 313
HpaII CCGG 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 50, 83
HpyAV CCTTC 2 cut(s) 139, 260
HpyCH4IV ACGT 2 cut(s) 179, 222
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 7, 144
HpySE526I ACGT 2 cut(s) 179, 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 124, 241
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 19, 85
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 15, 88, 92
LweI GCATC 2 cut(s) 71, 130
MaeI CTAG 1 cut(s) 279
MaeII ACGT 2 cut(s) 179, 222
MalI GATC 2 cut(s) 21, 87
MboI GATC 2 cut(s) 19, 85
MboII GAAGA 1 cut(s) 230
MflI RGATCY 1 cut(s) 19
MluCI AATT 2 cut(s) 36, 233
MnlI CCTC 3 cut(s) 16, 139, 166
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 76
NdeI CATATG 1 cut(s) 246
NdeII GATC 2 cut(s) 19, 85
NlaIII CATG 2 cut(s) 124, 241
PctI GAATGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 19, 85
ScrFI CCNGG 1 cut(s) 76
SetI ASST 7 cut(s) 13, 108, 114, 182, 225, 271, 284
SfaNI GCATC 2 cut(s) 71, 130
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 2 cut(s) 36, 233
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 74
TaiI ACGT 2 cut(s) 182, 225
TaqI TCGA 2 cut(s) 264, 271
TasI AATT 2 cut(s) 36, 233
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 4 cut(s) 72, 137, 226, 246
XapI RAATTY 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 279
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.