Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006386

Physical Location & Seq

Genomic Coordinates Forward (+)

50904282 .. 50906323

Gene Structure 2042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019366

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCCCATCGTGTTCGACTCGGAGTCTCGGACTCTGACTCAAATCTTCTCCTCCGCTCCTATTGCCTTCTTGACCGCTCCTATTGTTGCTCGGCTACTAGTCGTCAAAAGTTGTAATTACGAACGTTATTGGCCTGATTTGGGGTCCTATTACGACGGAATGGATTCAAGTGGAGAATGTGGTGTGCTTGCTGAGACCGTGTTTTACATTCCAGCTAAAAACCGAGCTAAAGATTGGTACAGATTAAAGATTAAGGAATACAAAAGGTCTCTGATTGCGTCAGGGTTTAATGCTGGTAAGGGATCCGACGTCAAACTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005623 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0044237 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

108

Amino Acids

12.04

Weight (kDa)

8.91

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14914 FvH4_3g26380
prunus_persica	Prupe.6G199600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0117641 RchiOBHm_Chr6g0270561
rosa_laevigata	RLG00000019052 RLG00000019366 RLG00000019367
rosa_multiflora	Rmu_co8019532.1_g000001 Rmu_co8259759.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033320 Rroxscaffold_2G00126300 Rroxscaffold_3G00218160 Rroxscaffold_4G00329500 Rroxscaffold_5G00359250
rosa_samantha	Rh2CG154500 Rh3AG203600 Rh3BG233400 Rh4DG365700 Rh5BG458000 Rh5CG479800 Rh6BG177900 Rh6BG223700 Rh6DG009700 Rh6DG216700 Rh7AG108700 Rh7AG109000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	312
AccBSI	CCGCTC	2 cut(s)	56, 77
AciI	CCGC	2 cut(s)	54, 75
AclI	AACGTT	1 cut(s)	124
AclWI	GGATC	2 cut(s)	297, 310
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	168
AhdI	GACNNNNNGTC	1 cut(s)	22
AhlI	ACTAGT	1 cut(s)	97
AluBI	AGCT	2 cut(s)	215, 227
AluI	AGCT	2 cut(s)	215, 227
Alw26I	GTCTC	3 cut(s)	30, 188, 273
AlwI	GGATC	2 cut(s)	297, 310
AoxI	GGCC	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	302
BccI	CCATC	1 cut(s)	14
BcoDI	GTCTC	3 cut(s)	30, 188, 273
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	144
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	145, 304
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	2 cut(s)	188, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	3 cut(s)	30, 188, 273
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	2 cut(s)	188, 273
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	2 cut(s)	54, 75
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	145, 304
BspPI	GGATC	2 cut(s)	297, 310
BspTNI	GGTCTC	2 cut(s)	188, 273
BsrBI	CCGCTC	2 cut(s)	56, 77
BssMI	GATC	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	3 cut(s)	30, 188, 273
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	238
CviJI	RGCY	4 cut(s)	94, 133, 215, 227
CviKI_1	RGCY	4 cut(s)	94, 133, 215, 227
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
DriI	GACNNNNNGTC	1 cut(s)	22
Eam1105I	GACNNNNNGTC	1 cut(s)	22
Eco31I	GGTCTC	2 cut(s)	188, 273
Eco47I	GGWCC	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	144
FspBI	CTAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	133
HgaI	GACGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	309
HinfI	GANTC	5 cut(s)	17, 23, 31, 37, 164
Hpy188I	TCNGA	5 cut(s)	22, 30, 36, 273, 307
Hpy188III	TCNNGA	1 cut(s)	70
Hpy99I	CGWCG	2 cut(s)	158, 311
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	2 cut(s)	124, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	124, 309
Hsp92I	GRCGYC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	61, 82
LpnPI	CCDG	4 cut(s)	147, 225, 267, 279
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	2 cut(s)	124, 309
MalI	GATC	1 cut(s)	304
MbiI	CCGCTC	2 cut(s)	56, 77
MboI	GATC	1 cut(s)	302
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	1 cut(s)	115
MlyI	GAGTC	4 cut(s)	11, 25, 31, 32
MnlI	CCTC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	3 cut(s)	245, 252, 288
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	145, 304
NmeAIII	GCCGAG	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	164
PleI	GAGTC	4 cut(s)	11, 25, 31, 31
PpsI	GAGTC	4 cut(s)	11, 25, 31, 31
PpuMI	RGGWCCY	1 cut(s)	144
Psp1406I	AACGTT	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	145, 304
PspPI	GGNCC	1 cut(s)	144
PspPPI	RGGWCCY	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	245, 252, 288
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	4 cut(s)	11, 25, 31, 32
SetI	ASST	5 cut(s)	127, 217, 229, 269, 312
SinI	GGWCC	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	54, 75
SspMI	CTAG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	2 cut(s)	127, 312
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	3 cut(s)	245, 252, 288
Tru9I	TTAA	3 cut(s)	245, 252, 288
TspGWI	ACGGA	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	1 cut(s)	98
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.