Rh7AG108700

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006386
Physical Location & Seq
Forward (+)
8569652 .. 8569972
321 bp
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UTR
Exon/CDS
Intron
Rh7AG108700.1

Sequence Viewer

Length: 321 bp
ATGCCAATTGATCAGAACCAGTGTGTGAACTCGGAAACATCTCATTATTCCGGAACTGTGAATGGAACAATCCATGTAGTTGTTGGTGGAGGAGGGAGCCACTTATCGGGTTTCAGACCAGTGCAGACCACTTGGAGCCTTTTCAAAGATTCCGATTTCGGCTTCACGAAGCTCACTGCATTTAACCACTCATCGCTTCTCTTGGAGTACAAGAAAAGCAGTGACGGGAAGGTCTATGATTCCTTCACCATCTCAAGGGACTACAGGCATGTCTTGGCTTGTGTACATGATGGTTGTGAACCAACTACTCTAGCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

106

Amino Acids

11.6

Weight (kDa)

6.26

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos_C PF14008 22 - 81 4.4e-18 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 50
AfaI GTAC 2 cut(s) 209, 285
AfiI CCNNNNNNNGG 2 cut(s) 106, 255
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 2 cut(s) 172, 314
AluI AGCT 2 cut(s) 172, 314
Aor13HI TCCGGA 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 238
BccI CCATC 2 cut(s) 257, 284
BclI TGATCA 1 cut(s) 10
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 98, 137
BpuEI CTTGAG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 255
Bse1I ACTGG 2 cut(s) 19, 119
BseAI TCCGGA 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 106, 255
BseNI ACTGG 2 cut(s) 19, 119
BseRI GAGGAG 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 106, 255
BsmFI GGGAC 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 1 cut(s) 10
BspEI TCCGGA 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 98, 137
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 2 cut(s) 19, 119
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 58
BstAUI TGTACA 1 cut(s) 283
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 177
BtsI GCAGTG 2 cut(s) 174, 226
BtsIMutI CAGTG 4 cut(s) 26, 126, 174, 226
Csp6I GTAC 2 cut(s) 208, 284
CviAII CATG 4 cut(s) 74, 269, 287, 318
CviJI RGCY 6 cut(s) 99, 138, 162, 172, 278, 314
CviKI_1 RGCY 6 cut(s) 99, 138, 162, 172, 278, 314
CviQI GTAC 2 cut(s) 208, 284
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
FaeI CATG 4 cut(s) 77, 272, 290, 321
FaiI YATR 5 cut(s) 75, 237, 270, 288, 319
FaqI GGGAC 1 cut(s) 272
FatI CATG 4 cut(s) 73, 268, 286, 317
FbaI TGATCA 1 cut(s) 10
FspBI CTAG 1 cut(s) 311
HapII CCGG 1 cut(s) 51
Hin1II CATG 4 cut(s) 77, 272, 290, 321
HinfI GANTC 2 cut(s) 149, 239
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 3 cut(s) 28, 284, 299
Hpy188I TCNGA 4 cut(s) 15, 34, 116, 154
Hpy188III TCNNGA 2 cut(s) 51, 166
Hpy8I GTNNAC 3 cut(s) 28, 284, 299
HpyAV CCTTC 2 cut(s) 223, 253
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 124, 179
Hsp92II CATG 4 cut(s) 77, 272, 290, 321
Kpn2I TCCGGA 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 96, 135
LpnPI CCDG 4 cut(s) 32, 64, 132, 250
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MfeI CAATTG 1 cut(s) 6
MluCI AATT 1 cut(s) 6
MnlI CCTC 2 cut(s) 83, 86
MroI TCCGGA 1 cut(s) 50
MseI TTAA 1 cut(s) 183
MspI CCGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 6
NdeII GATC 1 cut(s) 10
NlaIII CATG 4 cut(s) 77, 272, 290, 321
NlaIV GGNNCC 2 cut(s) 98, 137
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 272
PfeI GAWTC 2 cut(s) 149, 239
PspN4I GGNNCC 2 cut(s) 98, 137
RsaI GTAC 2 cut(s) 209, 285
RsaNI GTAC 2 cut(s) 208, 284
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 1 cut(s) 10
SetI ASST 3 cut(s) 174, 234, 316
SfcI CTRYAG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 1 cut(s) 6
SspMI CTAG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 58
TasI AATT 1 cut(s) 6
TatI WGTACW 2 cut(s) 207, 283
TfiI GAWTC 2 cut(s) 149, 239
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 4 cut(s) 26, 126, 181, 226
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspRI CASTG 4 cut(s) 26, 126, 181, 226
XceI RCATGY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.