Rroxscaffold_1G00033320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006386
Physical Location & Seq
Forward (+)
48073090 .. 48083430
10341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033320.1

Sequence Viewer

Length: 378 bp
ATGAAGCAAAGCCCCCAAGAGGTATTTTACATGGAATCGGATGCTTTTTCCCGCACCTGGAGGATTATACTGTTAGAACGATTGGCTCCCCGAGCTGCTTTTTCTGTCGGCAACCATACACTTCATCTCCTCTCCTTCCGATTCCCTTTCTCTTCCTCGGACGAGGAAGGATCGGGCAAATTCATTTCAAATCTGCCATCAAGACTTTGGCGGTGTCCAAGGCGTCCCCAAAAGCAGTTCCTCTTCCTCTGGGCGTTCGCTTCAACCGGGTGGGCTAGAATACTGTACCTCTATTCGGAGTTTGTCAATATCGGCTTGCCCAAGGTACCATCCATTCCAATCGAAAGTCGAGTGCAACCCTCGAAGATCCGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.56

Weight (kDa)

10.41

Isoelectric Point (pI)

74.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 325
AciI CCGC 2 cut(s) 52, 211
AclWI GGATC 2 cut(s) 178, 361
AcsI RAATTY 1 cut(s) 179
AcyI GRCGYC 1 cut(s) 223
AfaI GTAC 2 cut(s) 287, 327
AfiI CCNNNNNNNGG 3 cut(s) 19, 57, 295
AgsI TTSAA 2 cut(s) 189, 264
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AlwI GGATC 2 cut(s) 178, 361
Ama87I CYCGRG 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 90
BanI GGYRCC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 205, 337
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 1 cut(s) 268
BfaI CTAG 1 cut(s) 276
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 58, 268
BmeT110I CYCGRG 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 87, 327
BmrFI CCNGG 2 cut(s) 58, 268
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 223
BsaJI CCNNGG 3 cut(s) 156, 218, 321
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 57, 295
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 3 cut(s) 156, 218, 321
BseGI GGATG 2 cut(s) 46, 329
BseLI CCNNNNNNNGG 3 cut(s) 19, 57, 295
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 82
BshNI GGYRCC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 3 cut(s) 19, 57, 295
BsmFI GGGAC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 2 cut(s) 170, 366
BspACI CCGC 2 cut(s) 52, 211
BspLI GGNNCC 2 cut(s) 87, 327
BspPI GGATC 2 cut(s) 178, 361
BspT107I GGYRCC 1 cut(s) 325
BssECI CCNNGG 3 cut(s) 156, 218, 321
BssMI GATC 2 cut(s) 170, 366
BssNI GRCGYC 1 cut(s) 223
BssT1I CCWWGG 2 cut(s) 218, 321
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 72, 285
Bst6I CTCTTC 2 cut(s) 157, 248
BstACI GRCGYC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 317
BstF5I GGATG 2 cut(s) 46, 329
BstKTI GATC 2 cut(s) 173, 369
BstMBI GATC 2 cut(s) 170, 366
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 56, 266
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BtsCI GGATG 2 cut(s) 46, 329
Cac8I GCNNGC 1 cut(s) 317
CseI GACGC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 286, 326
CviAII CATG 1 cut(s) 31
CviJI RGCY 5 cut(s) 12, 86, 95, 275, 315
CviKI_1 RGCY 5 cut(s) 12, 86, 95, 275, 315
CviQI GTAC 2 cut(s) 286, 326
DpnI GATC 2 cut(s) 172, 368
DpnII GATC 2 cut(s) 170, 366
Eam1104I CTCTTC 2 cut(s) 157, 248
EarI CTCTTC 2 cut(s) 157, 248
Eco130I CCWWGG 2 cut(s) 218, 321
Eco88I CYCGRG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 218, 321
ErhI CCWWGG 2 cut(s) 218, 321
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 68, 117
FaqI GGGAC 1 cut(s) 210
FatI CATG 1 cut(s) 30
FauI CCCGC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 53, 316
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 276
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 79
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 1 cut(s) 34
HinfI GANTC 2 cut(s) 35, 141
HpaII CCGG 1 cut(s) 267
Hpy188I TCNGA 4 cut(s) 40, 140, 160, 298
Hpy188III TCNNGA 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 145, 161
HpyCH4III ACNGT 2 cut(s) 72, 285
HpyCH4V TGCA 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 1 cut(s) 34
KpnI GGTACC 1 cut(s) 329
Kzo9I GATC 2 cut(s) 170, 366
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 4 cut(s) 43, 70, 235, 280
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 276
MalI GATC 2 cut(s) 172, 368
MboI GATC 2 cut(s) 170, 366
MboII GAAGA 3 cut(s) 144, 235, 376
MflI RGATCY 1 cut(s) 366
MluCI AATT 1 cut(s) 179
MnlI CCTC 9 cut(s) 13, 54, 140, 157, 166, 251, 257, 299, 370
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 58, 268
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 268
NdeII GATC 2 cut(s) 170, 366
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 87, 327
PfeI GAWTC 2 cut(s) 35, 141
PkrI GCNGC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 87, 327
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 2 cut(s) 287, 327
RsaNI GTAC 2 cut(s) 286, 326
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 170, 366
ScrFI CCNGG 2 cut(s) 58, 268
SetI ASST 5 cut(s) 24, 59, 97, 291, 327
SfaNI GCATC 1 cut(s) 31
Sse9I AATT 1 cut(s) 179
SsiI CCGC 2 cut(s) 52, 211
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 56, 266
StyI CCWWGG 2 cut(s) 218, 321
TaaI ACNGT 2 cut(s) 72, 285
TaqI TCGA 3 cut(s) 342, 349, 362
TasI AATT 1 cut(s) 179
TfiI GAWTC 2 cut(s) 35, 141
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 17, 113, 172
TspGWI ACGGA 1 cut(s) 359
XapI RAATTY 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.