Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006386

Physical Location & Seq

Genomic Coordinates Forward (+)

8591069 .. 8592173

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG109000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCCTTATGCCAATGGATACATCTCACAGTGGGATCAGTTCACATCACAGGTGGAGCCGATTTCATCAGTTGTACCATATATGGTTGCCAGTGGCAACCATGAACGAGATACAACAGGGACCGGATCCTTCTACGACACTAATGATGCAGGTGGTGAATGTGGTGTGCCAGCTGAGACCATGTATTATGTTCCTGCTGAGAACAGAGCTAAATTCTGGTATGCAACAGATTATGGCATGTTTCACTTCTGTATAGCTGACACCGAGCATGACTGGAGAGAAGGTTCTGAGCAGTACAAATTTATTGAGAAATGCCTTGCATCTGCCAACAGGCACAAGCAGCCTTGGCTGATATTCGCTGCTCATCGTGTTCTCGGTTATTCCTCTAATTCTTGTTATGGACAAGAGGGTTCATTTGATGAGCCGACGGGAAGGGATGACATGCAAAAGCTTTGGCAAAGATACAAGGTGGACATTGCATTTTACGGCCATGTCCATAACTACGAAAGAATATGCCCCATCTATCAGAACCAGTGTGTAACTTCGGAAACATCTAACTATTCAGGAACTGTCAACGGAACAATCCATGTTGTTGTTGGTGGAGGAGGCAGCCACTTATCAGATTTTAGTTCGCTGCACACGGTTTGGAGCATTTACCAAGATCGAGATTATGGTTATACGAAACTCACAGCATATAACCACTCATCGCTCCTATTTGAGTACATGAAGAGCAGCGATGGAAAGGTCTATGATTCATTCACCATCTCAAGGGACTACAAGGATGTATTGGCCTGTGTTCATGATGGTTGTGAACCAACCACCTTAGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005618 GO:0005623 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030312 GO:0042578 GO:0044237 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

277

Amino Acids

31.43

Weight (kDa)

5.18

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	14 - 168	7.7e-10	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	193 - 252	2.8e-16	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14914 FvH4_3g26380
prunus_persica	Prupe.6G199600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0117641 RchiOBHm_Chr6g0270561
rosa_laevigata	RLG00000019052 RLG00000019366 RLG00000019367
rosa_multiflora	Rmu_co8019532.1_g000001 Rmu_co8259759.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033320 Rroxscaffold_2G00126300 Rroxscaffold_3G00218160 Rroxscaffold_4G00329500 Rroxscaffold_5G00359250
rosa_samantha	Rh2CG154500 Rh3AG203600 Rh3BG233400 Rh4DG365700 Rh5BG458000 Rh5CG479800 Rh6BG177900 Rh6BG223700 Rh6DG009700 Rh6DG216700 Rh7AG108700 Rh7AG109000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AclWI	GGATC	3 cut(s)	42, 120, 133
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	2 cut(s)	212, 299
AfaI	GTAC	3 cut(s)	75, 296, 722
AfiI	CCNNNNNNNGG	1 cut(s)	768
AloI	GAACNNNNNNTCC	2 cut(s)	268, 300
AluBI	AGCT	5 cut(s)	173, 209, 257, 451, 827
AluI	AGCT	5 cut(s)	173, 209, 257, 451, 827
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	42, 120, 133
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	487, 789
ApeKI	GCWGC	5 cut(s)	340, 359, 609, 634, 732
ApoI	RAATTY	2 cut(s)	212, 299
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	167, 751
AvaII	GGWCC	1 cut(s)	120
BamHI	GGATCC	1 cut(s)	125
BbvI	GCAGC	5 cut(s)	346, 352, 621, 621, 744
BccI	CCATC	4 cut(s)	527, 731, 770, 797
BceAI	ACGGC	1 cut(s)	502
BciVI	GTATCC	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	5 cut(s)	341, 360, 610, 635, 733
BlsI	GCNGC	5 cut(s)	342, 361, 611, 636, 734
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	3 cut(s)	57, 121, 127
BmsI	GCATC	2 cut(s)	136, 329
BpmI	CTGGAG	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	823
BpuEI	CTTGAG	1 cut(s)	751
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	768
Bse1I	ACTGG	3 cut(s)	90, 278, 532
Bse3DI	GCAATG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	2 cut(s)	442, 787
BseLI	CCNNNNNNNGG	1 cut(s)	768
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	3 cut(s)	165, 189, 279
BseNI	ACTGG	3 cut(s)	90, 278, 532
BseRI	GAGGAG	1 cut(s)	618
BseXI	GCAGC	5 cut(s)	346, 352, 621, 621, 744
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	2 cut(s)	489, 791
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	133, 785
BslI	CCNNNNNNNGG	1 cut(s)	768
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	2 cut(s)	133, 785
BsnI	GGCC	2 cut(s)	489, 791
Bso31I	GGTCTC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	34, 125, 661
BspANI	GGCC	2 cut(s)	489, 791
BspCNI	CTCAG	3 cut(s)	166, 190, 280
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	3 cut(s)	57, 121, 127
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	3 cut(s)	42, 120, 133
BspQI	GCTCTTC	1 cut(s)	722
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	3 cut(s)	90, 278, 532
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	3 cut(s)	34, 125, 661
BssT1I	CCWWGG	1 cut(s)	344
Bst4CI	ACNGT	3 cut(s)	30, 571, 643
Bst6I	CTCTTC	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	174, 198, 288, 823
BstF5I	GGATG	2 cut(s)	442, 787
BstKTI	GATC	3 cut(s)	37, 128, 664
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	34, 125, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 346
BstNSI	RCATGY	2 cut(s)	241, 445
BstV1I	GCAGC	5 cut(s)	346, 352, 621, 621, 744
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	489, 791
BtgZI	GCGATG	2 cut(s)	690, 750
BtsCI	GGATG	2 cut(s)	442, 787
BtsIMutI	CAGTG	3 cut(s)	35, 97, 539
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	799
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	74, 295, 721
CviQI	GTAC	3 cut(s)	74, 295, 721
DdeI	CTNAG	4 cut(s)	174, 198, 288, 823
DpnI	GATC	3 cut(s)	36, 127, 663
DpnII	GATC	3 cut(s)	34, 125, 661
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
Eco130I	CCWWGG	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
FaqI	GGGAC	2 cut(s)	133, 785
Fnu4HI	GCNGC	5 cut(s)	341, 360, 610, 635, 733
FokI	GGATG	2 cut(s)	449, 794
Fsp4HI	GCNGC	5 cut(s)	341, 360, 610, 635, 733
GluI	GCNGC	5 cut(s)	341, 360, 610, 635, 733
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	489, 791
HapII	CCGG	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	1 cut(s)	752
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	167, 751
Hpy166II	GTNNAC	4 cut(s)	42, 472, 574, 812
Hpy188I	TCNGA	4 cut(s)	289, 528, 547, 622
Hpy188III	TCNNGA	3 cut(s)	564, 665, 800
Hpy8I	GTNNAC	4 cut(s)	42, 472, 574, 812
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	139, 275, 426
HpyCH4III	ACNGT	3 cut(s)	30, 571, 643
HpyCH4V	TGCA	6 cut(s)	149, 224, 320, 445, 479, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 346
HpyF3I	CTNAG	4 cut(s)	174, 198, 288, 823
Kzo9I	GATC	3 cut(s)	34, 125, 661
LguI	GCTCTTC	1 cut(s)	722
LmnI	GCTCC	3 cut(s)	55, 648, 714
Lsp1109I	GCAGC	5 cut(s)	346, 352, 621, 621, 744
LweI	GCATC	2 cut(s)	136, 329
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	3 cut(s)	36, 127, 663
MboI	GATC	3 cut(s)	34, 125, 661
MboII	GAAGA	1 cut(s)	739
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	3 cut(s)	212, 299, 388
MnlI	CCTC	4 cut(s)	394, 400, 596, 599
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	340, 346
NdeII	GATC	3 cut(s)	34, 125, 661
NlaIV	GGNNCC	3 cut(s)	57, 121, 127
NspI	RCATGY	2 cut(s)	241, 445
PagI	TCATGA	1 cut(s)	799
PaqCI	CACCTGC	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	722
PfeI	GAWTC	1 cut(s)	752
PkrI	GCNGC	5 cut(s)	342, 361, 611, 636, 734
PspN4I	GGNNCC	3 cut(s)	57, 121, 127
PspPI	GGNCC	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	3 cut(s)	75, 296, 722
RsaNI	GTAC	3 cut(s)	74, 295, 721
SapI	GCTCTTC	1 cut(s)	722
SatI	GCNGC	5 cut(s)	341, 360, 610, 635, 733
Sau3AI	GATC	3 cut(s)	34, 125, 661
Sau96I	GGNCC	1 cut(s)	120
SfaNI	GCATC	2 cut(s)	136, 329
SinI	GGWCC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	766
SmoI	CTYRAG	1 cut(s)	766
Sse9I	AATT	3 cut(s)	212, 299, 388
StyI	CCWWGG	1 cut(s)	344
TaaI	ACNGT	3 cut(s)	30, 571, 643
TaqI	TCGA	1 cut(s)	664
TasI	AATT	3 cut(s)	212, 299, 388
TatI	WGTACW	2 cut(s)	294, 720
TfiI	GAWTC	1 cut(s)	752
TscAI	CASTG	3 cut(s)	35, 97, 539
TseI	GCWGC	5 cut(s)	340, 359, 609, 634, 732
TspDTI	ATGAA	6 cut(s)	54, 117, 402, 740, 744, 788
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	3 cut(s)	35, 97, 539
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	2 cut(s)	212, 299
XceI	RCATGY	2 cut(s)	241, 445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.