Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007556

Physical Location & Seq

Genomic Coordinates Forward (+)

41455660 .. 41458043

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGAGGTGACTATTATTTCCAGAGATACCATCATACCAGCCGCTACTTCCTCTTCAGTTCATCGTCCTAAGAAACCTTACCAACTTTGTATCTTCGATCAGCTCTTTCCCACAACTTACGTTCCAGTGGTTTTCTTCTACCCCATTTTTGATATCAATGTTTCCCAAACCCTAGCCCACCTGAAAAGCTCCCTATCATATACACTCGGTGTGTACTACCCATTTTCAGGACGGACGAAAAACAACCTTTGTATTGATGATTTCGATGCGGGTGTCCCCTACCTTGAAGCCCGAATCAATTATCGCCTGTTTGAGTTTCTTAAGCTCCATGAAATCGAGCTACTCAATCAGTTCGTTCCATTCCATCCATTTCGTCAGGAAACCGAATCTCATGATGATCCACTACCCTTATTAGCAGTTCAAGTTAGTGTTTTTTCTTGTGGTGGAATAGCAATTGGGGTCTCCCTATCTCACAAGATATTTGATGGGGACACGTCAAACAATTTCCTTAATTCTTGGTCTGCTGTTTTTCGTGGGGATCATGACAAAATTCTGCTACACACTAATCTCTACCAAGCTTCATTAAGTTTTCCAGCAAAAGATGACATACCAGAAAAATATATGTCTTTCATGGGTAGCATTCTGTTCAGGGGGAAAAGTTATATGACAAGGAGATTTGTGTTTAATGCTAAAGCCATAAACATTCTACGAGACAAAGCAAAGAGCGAGGTCGTGCCCAATCCAACACGTATAGAGACGCTAACTTGTTTTCTTTGGAAACACGCTACAGCTGCTTCTAGATATGGCAGTACTTCACGAAGAGCATCAATAGCAGCGCATGCAGTGAACATAAGGCCGCGATTGAAGCCCTCGATGTTAGATAACGCCATTGGAAATATTCTTTGGTGGGCAACAGCAACTAACATCCCTACTAATAAGAGAGAAACTGATGATGATGGTCAGTTGTGTGATTTGATGAAGCTTTTACATGAATCTATCAAAAGATTGGACAAAGACTATTTGAAGACATTGCAGGGAGAAAAGGGATTTGGAGCCATTTCTGAGTTCATTGATCGCCAAATAGAGGTTGTGTATTCTTTGGAACCAGAAACATATATATTCACCAGCTGGACTAAGATTTTGAAGGAAGTTGATTTTGGATGGGGGAGACCATTTTGGATTGGGGTCAAGGGGAAAGTAGGATCAACTCTTGGCAATCACACGGTGTTCGTTGAAACACAATGGGGCAAGGGCATAGAAGCATGGGTGACCTTGGAGGAAAAGCAAATGGCTGTAATGGAAAATGATCCTCAGTTTTTAGCATTTACTTCTCCAAACCCACGCATTTCAAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

452

Amino Acids

51.43

Weight (kDa)

7.68

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 439	7.1e-70	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277921 RchiOBHm_Chr6g0278361 RchiOBHm_Chr7g0198771
rosa_laevigata	RLG00000013255 RLG00000013256 RLG00000013258
rosa_multiflora	Rmu_co8080108.1_g000001 Rmu_sc0003733.1_g000034 Rmu_sc0003733.1_g000035
rosa_roxburghii	Rroxscaffold_6G00389520 Rroxscaffold_7G00190810
rosa_rugosa	Rorug01G0297800 Rorug06G0112800
rosa_samantha	Rh1AG306900 Rh3CG359500 Rh3CG359600 Rh6BG253100 Rh6BG253200 Rh6CG232800 Rh6CG232900 Rh6DG220500 Rh6DG223900 Rh6DG224000 Rh7CG432700
rosa_wichuraiana	Rw3G028630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	859
AciI	CCGC	3 cut(s)	42, 269, 857
AclWI	GGATC	4 cut(s)	392, 546, 1210, 1301
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	39
AdeI	CACNNNGTG	2 cut(s)	209, 1225
AfaI	GTAC	2 cut(s)	215, 811
AfiI	CCNNNNNNNGG	2 cut(s)	227, 1084
AflII	CTTAAG	1 cut(s)	320
AflIII	ACRYGT	2 cut(s)	492, 746
AgsI	TTSAA	7 cut(s)	287, 422, 865, 1024, 1144, 1235, 1350
AjiI	CACGTC	1 cut(s)	495
AjuI	GAANNNNNNNTTGG	6 cut(s)	886, 918, 1032, 1064, 1140, 1172
AluBI	AGCT	8 cut(s)	103, 189, 325, 340, 578, 791, 982, 1128
AluI	AGCT	8 cut(s)	103, 189, 325, 340, 578, 791, 982, 1128
Alw26I	GTCTC	4 cut(s)	466, 705, 749, 1162
AlwI	GGATC	4 cut(s)	392, 546, 1210, 1301
AoxI	GGCC	1 cut(s)	854
ApeKI	GCWGC	2 cut(s)	791, 833
ApoI	RAATTY	1 cut(s)	549
ArsI	GACNNNNNNTTYG	2 cut(s)	1123, 1155
AspLEI	GCGC	1 cut(s)	838
AsuHPI	GGTGA	3 cut(s)	19, 1114, 1279
BaeGI	GKGCMC	1 cut(s)	738
BbsI	GAAGAC	1 cut(s)	1031
BbvI	GCAGC	2 cut(s)	778, 845
BccI	CCATC	5 cut(s)	38, 372, 479, 950, 1155
BcoDI	GTCTC	4 cut(s)	466, 705, 749, 1162
BfaI	CTAG	2 cut(s)	173, 798
BfmI	CTRYAG	1 cut(s)	786
BfrI	CTTAAG	1 cut(s)	320
BisI	GCNGC	4 cut(s)	42, 792, 834, 857
BlsI	GCNGC	4 cut(s)	43, 793, 835, 858
BmcAI	AGTACT	1 cut(s)	811
BmgBI	CACGTC	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	1054, 1104
BmsI	GCATC	2 cut(s)	256, 833
BpiI	GAAGAC	1 cut(s)	1031
BsaAI	YACGTR	1 cut(s)	749
BsaI	GGTCTC	2 cut(s)	466, 1162
BsaJI	CCNNGG	1 cut(s)	1272
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 1084
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	1028
BseDI	CCNNGG	1 cut(s)	1272
BseGI	GGATG	3 cut(s)	364, 924, 1166
BseLI	CCNNNNNNNGG	2 cut(s)	227, 1084
BseMI	GCAATG	1 cut(s)	1028
BseMII	CTCAG	2 cut(s)	1053, 1325
BseNI	ACTGG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	2 cut(s)	778, 845
Bsh1236I	CGCG	1 cut(s)	859
BshFI	GGCC	1 cut(s)	856
BslFI	GGGAC	2 cut(s)	260, 503
BslI	CCNNNNNNNGG	2 cut(s)	227, 1084
BsmAI	GTCTC	4 cut(s)	466, 705, 749, 1162
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	2 cut(s)	260, 503
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	856
Bso31I	GGTCTC	2 cut(s)	466, 1162
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp143I	GATC	6 cut(s)	97, 397, 538, 1072, 1202, 1306
BspACI	CCGC	3 cut(s)	42, 269, 857
BspANI	GGCC	1 cut(s)	856
BspCNI	CTCAG	2 cut(s)	1054, 1324
BspFNI	CGCG	1 cut(s)	859
BspHI	TCATGA	2 cut(s)	391, 541
BspLI	GGNNCC	2 cut(s)	1054, 1104
BspPI	GGATC	4 cut(s)	392, 546, 1210, 1301
BspQI	GCTCTTC	1 cut(s)	814
BspTI	CTTAAG	1 cut(s)	320
BspTNI	GGTCTC	2 cut(s)	466, 1162
BsrDI	GCAATG	1 cut(s)	1028
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	1272
BssMI	GATC	6 cut(s)	97, 397, 538, 1072, 1202, 1306
BssT1I	CCWWGG	1 cut(s)	1272
Bst4CI	ACNGT	1 cut(s)	1225
Bst6I	CTCTTC	2 cut(s)	58, 814
BstAFI	CTTAAG	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstBAI	YACGTR	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	840
BstDEI	CTNAG	4 cut(s)	69, 1062, 1134, 1311
BstEII	GGTNACC	1 cut(s)	1267
BstF5I	GGATG	3 cut(s)	364, 924, 1166
BstFNI	CGCG	1 cut(s)	859
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	6 cut(s)	100, 400, 541, 1075, 1205, 1309
BstMAI	GTCTC	4 cut(s)	466, 705, 749, 1162
BstMBI	GATC	6 cut(s)	97, 397, 538, 1072, 1202, 1306
BstMWI	GCNNNNNNNGC	5 cut(s)	791, 830, 839, 865, 1350
BstNSI	RCATGY	2 cut(s)	842, 1357
BstPI	GGTNACC	1 cut(s)	1267
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	738
BstUI	CGCG	1 cut(s)	859
BstV1I	GCAGC	2 cut(s)	778, 845
BstV2I	GAAGAC	1 cut(s)	1031
BsuRI	GGCC	1 cut(s)	856
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	364, 924, 1166
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	2 cut(s)	132, 849
Cac8I	GCNNGC	1 cut(s)	840
CciI	TCATGA	2 cut(s)	391, 541
CfoI	GCGC	1 cut(s)	838
CseI	GACGC	1 cut(s)	766
Csp6I	GTAC	2 cut(s)	214, 810
CviAII	CATG	8 cut(s)	329, 392, 542, 631, 839, 989, 1263, 1354
CviQI	GTAC	2 cut(s)	214, 810
DdeI	CTNAG	4 cut(s)	69, 1062, 1134, 1311
DpnI	GATC	6 cut(s)	99, 399, 540, 1074, 1204, 1308
DpnII	GATC	6 cut(s)	97, 397, 538, 1072, 1202, 1306
DraIII	CACNNNGTG	2 cut(s)	209, 1225
Eam1104I	CTCTTC	2 cut(s)	58, 814
EarI	CTCTTC	2 cut(s)	58, 814
Eco130I	CCWWGG	1 cut(s)	1272
Eco31I	GGTCTC	2 cut(s)	466, 1162
Eco32I	GATATC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	1267
EcoO65I	GGTNACC	1 cut(s)	1267
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	1272
ErhI	CCWWGG	1 cut(s)	1272
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	8 cut(s)	332, 395, 545, 634, 842, 992, 1266, 1357
FaqI	GGGAC	2 cut(s)	260, 503
FatI	CATG	8 cut(s)	328, 391, 541, 630, 838, 988, 1262, 1353
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	42, 792, 834, 857
FokI	GGATG	3 cut(s)	351, 911, 1173
Fsp4HI	GCNGC	4 cut(s)	42, 792, 834, 857
FspBI	CTAG	2 cut(s)	173, 798
GlaI	GCGC	1 cut(s)	837
GluI	GCNGC	4 cut(s)	42, 792, 834, 857
HaeIII	GGCC	1 cut(s)	856
HgaI	GACGC	1 cut(s)	766
HhaI	GCGC	1 cut(s)	838
Hin1II	CATG	8 cut(s)	332, 395, 545, 634, 842, 992, 1266, 1357
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HindIII	AAGCTT	2 cut(s)	576, 980
HinfI	GANTC	3 cut(s)	294, 386, 992
HphI	GGTGA	3 cut(s)	19, 1114, 1279
Hpy166II	GTNNAC	2 cut(s)	214, 847
Hpy188I	TCNGA	1 cut(s)	1063
Hpy188III	TCNNGA	7 cut(s)	21, 228, 377, 392, 542, 798, 816
Hpy8I	GTNNAC	2 cut(s)	214, 847
HpyAV	CCTTC	1 cut(s)	1138
HpyCH4III	ACNGT	1 cut(s)	1225
HpyCH4IV	ACGT	3 cut(s)	120, 494, 748
HpyCH4V	TGCA	2 cut(s)	842, 1033
HpyF10VI	GCNNNNNNNGC	5 cut(s)	791, 830, 839, 865, 1350
HpyF3I	CTNAG	4 cut(s)	69, 1062, 1134, 1311
HpySE526I	ACGT	3 cut(s)	120, 494, 748
Hsp92II	CATG	8 cut(s)	332, 395, 545, 634, 842, 992, 1266, 1357
HspAI	GCGC	1 cut(s)	836
Kzo9I	GATC	6 cut(s)	97, 397, 538, 1072, 1202, 1306
LguI	GCTCTTC	1 cut(s)	814
LmnI	GCTCC	3 cut(s)	194, 330, 1052
Lsp1109I	GCAGC	2 cut(s)	778, 845
LweI	GCATC	2 cut(s)	256, 833
MaeI	CTAG	2 cut(s)	173, 798
MaeII	ACGT	3 cut(s)	120, 494, 748
MaeIII	GTNAC	2 cut(s)	7, 1267
MalI	GATC	6 cut(s)	99, 399, 540, 1074, 1204, 1308
MboI	GATC	6 cut(s)	97, 397, 538, 1072, 1202, 1306
MboII	GAAGA	5 cut(s)	45, 85, 127, 831, 1036
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	5 cut(s)	298, 453, 502, 511, 549
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	6 cut(s)	61, 721, 880, 1078, 1270, 1320
MseI	TTAA	4 cut(s)	321, 510, 584, 684
MspA1I	CMGCKG	2 cut(s)	791, 1128
MspCI	CTTAAG	1 cut(s)	320
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	639
MvnI	CGCG	1 cut(s)	859
MwoI	GCNNNNNNNGC	5 cut(s)	791, 830, 839, 865, 1350
NdeII	GATC	6 cut(s)	97, 397, 538, 1072, 1202, 1306
NlaIII	CATG	8 cut(s)	332, 395, 545, 634, 842, 992, 1266, 1357
NlaIV	GGNNCC	2 cut(s)	1054, 1104
NmuCI	GTSAC	2 cut(s)	7, 1267
NspI	RCATGY	2 cut(s)	842, 1357
PaeI	GCATGC	1 cut(s)	842
PagI	TCATGA	2 cut(s)	391, 541
PciSI	GCTCTTC	1 cut(s)	814
PctI	GAATGC	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	294, 386, 992
PkrI	GCNGC	4 cut(s)	43, 793, 835, 858
Ppu21I	YACGTR	1 cut(s)	749
PspEI	GGTNACC	1 cut(s)	1267
PspN4I	GGNNCC	2 cut(s)	1054, 1104
PvuII	CAGCTG	2 cut(s)	791, 1128
RsaI	GTAC	2 cut(s)	215, 811
RsaNI	GTAC	2 cut(s)	214, 810
SapI	GCTCTTC	1 cut(s)	814
SaqAI	TTAA	4 cut(s)	321, 510, 584, 684
SatI	GCNGC	4 cut(s)	42, 792, 834, 857
Sau3AI	GATC	6 cut(s)	97, 397, 538, 1072, 1202, 1306
ScaI	AGTACT	1 cut(s)	811
SduI	GDGCHC	1 cut(s)	738
SfaNI	GCATC	2 cut(s)	256, 833
SfcI	CTRYAG	1 cut(s)	786
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SphI	GCATGC	1 cut(s)	842
Sse9I	AATT	5 cut(s)	298, 453, 502, 511, 549
SsiI	CCGC	3 cut(s)	42, 269, 857
SspI	AATATT	1 cut(s)	898
SspMI	CTAG	2 cut(s)	173, 798
StyI	CCWWGG	1 cut(s)	1272
TaaI	ACNGT	1 cut(s)	1225
TaiI	ACGT	3 cut(s)	123, 497, 751
TaqI	TCGA	4 cut(s)	96, 264, 336, 872
TasI	AATT	5 cut(s)	298, 453, 502, 511, 549
TatI	WGTACW	2 cut(s)	213, 809
TauI	GCSGC	2 cut(s)	44, 859
TfiI	GAWTC	3 cut(s)	294, 386, 992
Tru1I	TTAA	4 cut(s)	321, 510, 584, 684
Tru9I	TTAA	4 cut(s)	321, 510, 584, 684
TscAI	CASTG	2 cut(s)	132, 849
TseFI	GTSAC	2 cut(s)	7, 1267
TseI	GCWGC	2 cut(s)	791, 833
Tsp45I	GTSAC	2 cut(s)	7, 1267
TspDTI	ATGAA	7 cut(s)	50, 345, 570, 619, 992, 1005, 1057
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	2 cut(s)	132, 849
Vha464I	CTTAAG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	549
XbaI	TCTAGA	1 cut(s)	797
XceI	RCATGY	2 cut(s)	842, 1357
XspI	CTAG	2 cut(s)	173, 798
ZrmI	AGTACT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.