Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007556

Physical Location & Seq

Genomic Coordinates Reverse (-)

44582705 .. 44583046

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG359600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGATGGGGTCACGGCAAACAATTTCCTCAAATCTTGGGCTGCTGTTTTTCGTGGGGATCATGACAAAACTCTGCTACACACTAATCTCTACCAAGCTTCATTAAGTTTTCCAGCAAAAGATGACATACCAGAAAAATATCTGGCTTTCACGGATAGCATGTTTTTCAGAGGAAAACGTTATATGACAAAGAGATTTGTGTTTAATGCTAAAGCCATAGACAGTCTACGAGATAAAGCAAAGAGCGAGGTCGTGCCCAATCCAACACGTATAGAGACGCTAACTTGTTTTCTTTGGAAACACGCTACGGCTGCTTCTAGATATGGTTTGAAACTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

113

Amino Acids

12.94

Weight (kDa)

9.72

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 107	6.9e-13	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277921 RchiOBHm_Chr6g0278361 RchiOBHm_Chr7g0198771
rosa_laevigata	RLG00000013255 RLG00000013256 RLG00000013258
rosa_multiflora	Rmu_co8080108.1_g000001 Rmu_sc0003733.1_g000034 Rmu_sc0003733.1_g000035
rosa_roxburghii	Rroxscaffold_6G00389520 Rroxscaffold_7G00190810
rosa_rugosa	Rorug01G0297800 Rorug06G0112800
rosa_samantha	Rh1AG306900 Rh3CG359500 Rh3CG359600 Rh6BG253100 Rh6BG253200 Rh6CG232800 Rh6CG232900 Rh6DG220500 Rh6DG223900 Rh6DG224000 Rh7CG432700
rosa_wichuraiana	Rw3G028630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	226
AclI	AACGTT	1 cut(s)	178
AclWI	GGATC	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	41, 311
BaeGI	GKGCMC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	28, 298
BceAI	ACGGC	2 cut(s)	30, 324
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	2 cut(s)	42, 312
BlsI	GCNGC	2 cut(s)	43, 313
BsaAI	YACGTR	1 cut(s)	269
BseGI	GGATG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	2 cut(s)	28, 298
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	61
BspPI	GGATC	1 cut(s)	66
BssMI	GATC	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	28, 298
BtsCI	GGATG	1 cut(s)	10
CciI	TCATGA	1 cut(s)	61
CseI	GACGC	1 cut(s)	286
CviAII	CATG	2 cut(s)	62, 160
CviJI	RGCY	5 cut(s)	41, 98, 146, 215, 311
CviKI_1	RGCY	5 cut(s)	41, 98, 146, 215, 311
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	2 cut(s)	65, 163
FaiI	YATR	9 cut(s)	63, 128, 161, 183, 185, 218, 272, 324, 340
FatI	CATG	2 cut(s)	61, 159
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	42, 312
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	42, 312
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	2 cut(s)	42, 312
HgaI	GACGC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	65, 163
HindIII	AAGCTT	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	62, 318
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	2 cut(s)	178, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpySE526I	ACGT	2 cut(s)	178, 268
Hsp92II	CATG	2 cut(s)	65, 163
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	126, 128, 144
Lsp1109I	GCAGC	2 cut(s)	28, 298
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	2 cut(s)	178, 268
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	38, 164, 241
MseI	TTAA	2 cut(s)	104, 204
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	65, 163
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	163
PagI	TCATGA	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	43, 313
Ppu21I	YACGTR	1 cut(s)	269
Psp1406I	AACGTT	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	104, 204
SatI	GCNGC	2 cut(s)	42, 312
Sau3AI	GATC	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	4 cut(s)	100, 181, 252, 271
Sse9I	AATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	2 cut(s)	181, 271
TasI	AATT	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	104, 204
Tru9I	TTAA	2 cut(s)	104, 204
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	41, 311
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	90, 327
TspGWI	ACGGA	1 cut(s)	167
XbaI	TCTAGA	1 cut(s)	317
XceI	RCATGY	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.