Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003733.1

Orthogroup ID

OG0007556

Physical Location & Seq

Genomic Coordinates Reverse (-)

92097 .. 92582

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003733.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgttagataatgccattggaaatattttttggtgggcaatagcggctaacatccctactaataagagagaaagtggtgatgatgatcagttgtgtgatctgatgaagcttttacatgaatctataaaaggattggacaatgactatttgaagacattgcagggagaagagggatttggagccatttctaagttcatggatcgctatttagaggttgcgcattcttggaaaccggaaacatatgtattcactagctggactaagattttcaaggaagttgattttggatgggggagaccgttctggattggggtcatggggaaagttagaccaactttgggcaatctcatagtgtttgttgaaacacaatggggtaagggcatagaagcatgggtgaccttggaggaaaagcaaatggctgtaatggaaaaagatcctcaatttttagcatttacttctccaaacccacgcatttcaagcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

161

Amino Acids

18.5

Weight (kDa)

5.07

Isoelectric Point (pI)

25.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277921 RchiOBHm_Chr6g0278361 RchiOBHm_Chr7g0198771
rosa_laevigata	RLG00000013255 RLG00000013256 RLG00000013258
rosa_multiflora	Rmu_co8080108.1_g000001 Rmu_sc0003733.1_g000034 Rmu_sc0003733.1_g000035
rosa_roxburghii	Rroxscaffold_6G00389520 Rroxscaffold_7G00190810
rosa_rugosa	Rorug01G0297800 Rorug06G0112800
rosa_samantha	Rh1AG306900 Rh3CG359500 Rh3CG359600 Rh6BG253100 Rh6BG253200 Rh6CG232800 Rh6CG232900 Rh6DG220500 Rh6DG223900 Rh6DG224000 Rh7CG432700
rosa_wichuraiana	Rw3G028630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	207, 428
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	151, 271, 362, 477
AjuI	GAANNNNNNNTTGG	6 cut(s)	13, 45, 159, 191, 267, 299
AluBI	AGCT	2 cut(s)	109, 255
AluI	AGCT	2 cut(s)	109, 255
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	2 cut(s)	207, 428
AspLEI	GCGC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	89, 406
BbsI	GAAGAC	1 cut(s)	158
BccI	CCATC	1 cut(s)	282
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	2 cut(s)	51, 293
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	85, 97, 199, 433
BspACI	CCGC	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	2 cut(s)	207, 428
BspTNI	GGTCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	4 cut(s)	85, 97, 199, 433
BssT1I	CCWWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	189, 261
BstEII	GGTNACC	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	51, 293
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	4 cut(s)	88, 100, 202, 436
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	4 cut(s)	85, 97, 199, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 477
BstNSI	RCATGY	1 cut(s)	484
BstPI	GGTNACC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	51, 293
CfoI	GCGC	1 cut(s)	220
CviAII	CATG	5 cut(s)	116, 196, 316, 390, 481
CviJI	RGCY	5 cut(s)	47, 109, 182, 255, 419
CviKI_1	RGCY	5 cut(s)	47, 109, 182, 255, 419
DdeI	CTNAG	2 cut(s)	189, 261
DpnI	GATC	4 cut(s)	87, 99, 201, 435
DpnII	GATC	4 cut(s)	85, 97, 199, 433
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	394
EcoO65I	GGTNACC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	5 cut(s)	119, 199, 319, 393, 484
FatI	CATG	5 cut(s)	115, 195, 315, 389, 480
FauNDI	CATATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	38, 300
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	252
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	45
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	5 cut(s)	119, 199, 319, 393, 484
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	89, 406
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 477
HpyF3I	CTNAG	2 cut(s)	189, 261
Hsp92II	CATG	5 cut(s)	119, 199, 319, 393, 484
HspAI	GCGC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	85, 97, 199, 433
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	4 cut(s)	146, 241, 246, 289
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	4 cut(s)	87, 99, 201, 435
MboI	GATC	4 cut(s)	85, 97, 199, 433
MboII	GAAGA	2 cut(s)	163, 179
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	1 cut(s)	440
MnlI	CCTC	4 cut(s)	163, 205, 397, 447
MspI	CCGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	44, 477
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	4 cut(s)	85, 97, 199, 433
NlaIII	CATG	5 cut(s)	119, 199, 319, 393, 484
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	394
NsbI	TGCGCA	1 cut(s)	219
NspI	RCATGY	1 cut(s)	484
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	46
PspEI	GGTNACC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	433
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	4 cut(s)	85, 97, 199, 433
SetI	ASST	4 cut(s)	111, 216, 257, 401
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	300
TasI	AATT	1 cut(s)	440
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	3 cut(s)	119, 132, 184
XceI	RCATGY	1 cut(s)	484
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.