Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8080108.1

Orthogroup ID

OG0007556

Physical Location & Seq

Genomic Coordinates Reverse (-)

36 .. 524

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8080108.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgccagatgacgccattggaaatctattttggtgggctactgcagtctacaacactactgataaggcagagactactgatgagttgtgtgatttgttgaagatattacatgaatctctcaatggacttgaccatgatcattttttggatacattgcgcggagaagagggacgtcgagccatttttgaatacctcgatcaattgttggagggcatggattccttagatccaacaccagacatttatgcgttcactagctggattaatattctcgatgaagttgattttggatggggaaagccattttggattggggtcatgggaaaagttggacctgcctttaggaacctcactgtgttcgtcaaaacacaaagggataacggcattgaagcatgggtgaccatggatgaaaagcaaatgtctataatggaaaaagatcctcaatttttagcatttgcttctccaaacccgcgcattttaaatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

162

Amino Acids

18.55

Weight (kDa)

4.34

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277921 RchiOBHm_Chr6g0278361 RchiOBHm_Chr7g0198771
rosa_laevigata	RLG00000013255 RLG00000013256 RLG00000013258
rosa_multiflora	Rmu_co8080108.1_g000001 Rmu_sc0003733.1_g000034 Rmu_sc0003733.1_g000035
rosa_roxburghii	Rroxscaffold_6G00389520 Rroxscaffold_7G00190810
rosa_rugosa	Rorug01G0297800 Rorug06G0112800
rosa_samantha	Rh1AG306900 Rh3CG359500 Rh3CG359600 Rh6BG253100 Rh6BG253200 Rh6CG232800 Rh6CG232900 Rh6DG220500 Rh6DG223900 Rh6DG224000 Rh7CG432700
rosa_wichuraiana	Rw3G028630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	2 cut(s)	159, 472
AciI	CCGC	2 cut(s)	159, 470
AclWI	GGATC	2 cut(s)	221, 431
AcyI	GRCGYC	2 cut(s)	12, 172
AgsI	TTSAA	3 cut(s)	100, 188, 389
AjuI	GAANNNNNNNTTGG	6 cut(s)	13, 45, 270, 289, 302, 321
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	221, 431
AseI	ATTAAT	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	159, 474
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	332
BccI	CCATC	1 cut(s)	285
BceAI	ACGGC	1 cut(s)	397
BciVI	GTATCC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	343
BfuI	GTATCC	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	347
BsaHI	GRCGYC	2 cut(s)	12, 172
BsaJI	CCNNGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	296, 412
BseMI	GCAATG	1 cut(s)	152
Bsh1236I	CGCG	2 cut(s)	159, 472
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	136, 196, 226, 436
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	2 cut(s)	159, 470
BspFNI	CGCG	2 cut(s)	159, 472
BspLI	GGNNCC	1 cut(s)	347
BspMAI	CTGCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	2 cut(s)	221, 431
BsrDI	GCAATG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	4 cut(s)	136, 196, 226, 436
BssNI	GRCGYC	2 cut(s)	12, 172
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	2 cut(s)	12, 172
BstDEI	CTNAG	1 cut(s)	223
BstDSI	CCRYGG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	397
BstF5I	GGATG	2 cut(s)	296, 412
BstFNI	CGCG	2 cut(s)	159, 472
BstHHI	GCGC	2 cut(s)	159, 474
BstKTI	GATC	4 cut(s)	139, 199, 229, 439
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	4 cut(s)	136, 196, 226, 436
BstPI	GGTNACC	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	2 cut(s)	159, 472
BstX2I	RGATCY	2 cut(s)	226, 436
BstYI	RGATCY	2 cut(s)	226, 436
BsuI	GTATCC	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	296, 412
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	343
CfoI	GCGC	2 cut(s)	159, 474
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	1 cut(s)	20
CviAII	CATG	6 cut(s)	110, 134, 214, 319, 393, 403
CviJI	RGCY	4 cut(s)	38, 179, 258, 301
CviKI_1	RGCY	4 cut(s)	38, 179, 258, 301
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	4 cut(s)	138, 198, 228, 438
DpnII	GATC	4 cut(s)	136, 196, 226, 436
DraI	TTTAAA	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	6 cut(s)	113, 137, 217, 322, 396, 406
FaiI	YATR	9 cut(s)	111, 135, 215, 246, 320, 394, 404, 425, 487
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	6 cut(s)	109, 133, 213, 318, 392, 402
FauI	CCCGC	1 cut(s)	477
FbaI	TGATCA	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	48
FokI	GGATG	2 cut(s)	303, 419
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	2 cut(s)	158, 473
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	159, 474
Hin1I	GRCGYC	2 cut(s)	12, 172
Hin1II	CATG	6 cut(s)	113, 137, 217, 322, 396, 406
Hin6I	GCGC	2 cut(s)	157, 472
HinP1I	GCGC	2 cut(s)	157, 472
HinfI	GANTC	2 cut(s)	113, 218
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	49, 252
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	2 cut(s)	49, 252
Hpy99I	CGWCG	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	172
Hsp92I	GRCGYC	2 cut(s)	12, 172
Hsp92II	CATG	6 cut(s)	113, 137, 217, 322, 396, 406
HspAI	GCGC	2 cut(s)	157, 472
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	136, 196, 226, 436
LpnPI	CCDG	4 cut(s)	18, 244, 249, 348
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	4 cut(s)	138, 198, 228, 438
MboI	GATC	4 cut(s)	136, 196, 226, 436
MboII	GAAGA	2 cut(s)	112, 176
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	2 cut(s)	226, 436
MluCI	AATT	2 cut(s)	200, 443
MmeI	TCCRAC	3 cut(s)	186, 254, 310
MnlI	CCTC	5 cut(s)	160, 202, 203, 359, 450
MseI	TTAA	2 cut(s)	264, 479
MunI	CAATTG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	159, 472
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	136, 196, 226, 436
NlaIII	CATG	6 cut(s)	113, 137, 217, 322, 396, 406
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	113, 218
PshBI	ATTAAT	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	2 cut(s)	226, 436
SaqAI	TTAA	2 cut(s)	264, 479
Sau3AI	GATC	4 cut(s)	136, 196, 226, 436
Sau96I	GGNCC	1 cut(s)	332
SetI	ASST	5 cut(s)	175, 195, 260, 337, 351
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	2 cut(s)	200, 443
SsiI	CCGC	2 cut(s)	159, 470
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	3 cut(s)	175, 195, 273
TasI	AATT	2 cut(s)	200, 443
TfiI	GAWTC	2 cut(s)	113, 218
Tru1I	TTAA	2 cut(s)	264, 479
Tru9I	TTAA	2 cut(s)	264, 479
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	3 cut(s)	126, 291, 423
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	332
VspI	ATTAAT	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.