Rh6DG220500

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007556
Physical Location & Seq
Reverse (-)
39258345 .. 39260006
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG220500.1

Sequence Viewer

Length: 1053 bp
ATGTCTGAGTTTCTTAAGCTCCATGAAATTGAGCTACTCAATCAGTTCATTCCATTCCATCCATTTTGTCAGGAAGCCAAATCTCAAGATGATCTGCTACCCTTATTAGCAATTCAAGTCAGTGTTTTTTCATGTGGTGGAATAGCAATTGGGATCTCCGCATCTCACAAGATCTTTGATGGGGCCACCGGAAACAATTTCCTCAAATCTTGGGCTGCTGTTTTTCGTGGGGATCATGATAAAACTCTGCTACACACTAATCTCTACCAAGCTTCCTTAAGTTTTCCAGCAAAAGATGACATACCAGAAAAATATCTGGCTTTCATGGATAACATCGTTTTCAGTGGAAAACATTATTTGATAAGGAGATTTGTGTTTAATGCTAAAGCCATAGACAATCTACGAGATAAAGCAAAGAGCGAGGTCGTGCCCAATCCAACACGTATAGAGACGCTAACTTGTTTTCTTTGGAAACACGCTACAGCTGCTTCTAGATATGGTAGTACTTCACGAAGAGCATCCATAATAGCGCATGTAGTGGATATAAGGTCGCAATTGAAGCTCTCGATGTTAGATAACGCCATTGGAAATATTTTTTGGTGGGCAATAGCGGCTAACATCCCTACAAATAAGGGAGAAACTGGTGATGATGATCAGTTGTGTGATCTGATGAAGCTTTTACATGAATCTATCAAAGGATTGGACAATGACTATTTGAAGACTTTCCAAGGAGAAGAGGGATTTGGAGCCATTTCTAAGTTCATCGATCGCCATTTAGAGGTTGTGTATTCTTTGAAACCGGAAACATATATATTCACCAGCTGGACTAAGATTTTCAAGGAAGTTGATTTTGGATGGGGGAGACCGTTTTGGATTGGGGTCATGGGGAAAGTTGGACCAACTGCGGGCAATGCCATAATGTTTGTTGAAACACAACAGGGTAAGGGCATAGAAGCATGGGTGACCTTGGAGGAAAAGCAAATGGCTGTAATGGAAAAAGATCCTCAATTTTTAGCATTTACTTCTCAAAACCCACGCATTTCAAGTATGTGA

Protein Analysis

350

Amino Acids

39.46

Weight (kDa)

6.37

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 337 2.5e-50 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 159, 611, 905
AclWI GGATC 3 cut(s) 161, 240, 995
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 2 cut(s) 778, 905
AflII CTTAAG 2 cut(s) 14, 277
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 7 cut(s) 116, 559, 718, 796, 838, 929, 1044
AjuI GAANNNNNNNTTGG 6 cut(s) 580, 612, 726, 758, 834, 866
AluBI AGCT 7 cut(s) 19, 34, 272, 485, 562, 676, 822
AluI AGCT 7 cut(s) 19, 34, 272, 485, 562, 676, 822
Alw26I GTCTC 2 cut(s) 443, 856
AlwI GGATC 3 cut(s) 161, 240, 995
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 215, 485
Asp700I GAANNNNTTC 1 cut(s) 722
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 2 cut(s) 183, 896
AsuHPI GGTGA 3 cut(s) 656, 808, 973
AvaII GGWCC 1 cut(s) 896
BaeGI GKGCMC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 725
BbvI GCAGC 2 cut(s) 202, 472
BccI CCATC 3 cut(s) 66, 173, 849
BclI TGATCA 1 cut(s) 652
BcoDI GTCTC 2 cut(s) 443, 856
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 480
BfrI CTTAAG 2 cut(s) 14, 277
BglII AGATCT 1 cut(s) 171
BisI GCNGC 3 cut(s) 216, 486, 612
BlsI GCNGC 3 cut(s) 217, 487, 613
BmcAI AGTACT 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 896
BmgT120I GGNCC 2 cut(s) 183, 896
BmiI GGNNCC 2 cut(s) 184, 748
BmsI GCATC 2 cut(s) 170, 527
BpiI GAAGAC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 765
BsaAI YACGTR 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 856
BsaJI CCNNGG 2 cut(s) 727, 966
BsaWI WCCGGW 2 cut(s) 188, 799
Bsc4I CCNNNNNNNGG 2 cut(s) 778, 905
Bse1I ACTGG 1 cut(s) 646
Bse3DI GCAATG 1 cut(s) 916
Bse8I GATNNNNATC 1 cut(s) 651
BseCI ATCGAT 1 cut(s) 765
BseDI CCNNGG 2 cut(s) 727, 966
BseGI GGATG 4 cut(s) 58, 518, 618, 860
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 2 cut(s) 778, 905
BseMI GCAATG 1 cut(s) 916
BseNI ACTGG 1 cut(s) 646
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 2 cut(s) 202, 472
Bsh1285I CGRYCG 1 cut(s) 769
BshFI GGCC 1 cut(s) 185
BshVI ATCGAT 1 cut(s) 765
BsiEI CGRYCG 1 cut(s) 769
BsiSI CCGG 2 cut(s) 189, 800
BslI CCNNNNNNNGG 2 cut(s) 778, 905
BsmAI GTCTC 2 cut(s) 443, 856
BsmBI CGTCTC 1 cut(s) 443
BsnI GGCC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 856
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 8 cut(s) 91, 153, 171, 232, 652, 664, 766, 1000
BspACI CCGC 3 cut(s) 159, 611, 905
BspANI GGCC 1 cut(s) 185
BspDI ATCGAT 1 cut(s) 765
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 184, 748
BspPI GGATC 3 cut(s) 161, 240, 995
BspQI GCTCTTC 1 cut(s) 508
BspTI CTTAAG 2 cut(s) 14, 277
BspTNI GGTCTC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 916
BsrI ACTGG 1 cut(s) 646
BssECI CCNNGG 2 cut(s) 727, 966
BssMI GATC 8 cut(s) 91, 153, 171, 232, 652, 664, 766, 1000
BssT1I CCWWGG 2 cut(s) 727, 966
Bst4CI ACNGT 1 cut(s) 867
Bst6I CTCTTC 2 cut(s) 508, 729
BstAFI CTTAAG 2 cut(s) 14, 277
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 907
BstDEI CTNAG 3 cut(s) 6, 756, 828
BstEII GGTNACC 1 cut(s) 961
BstF5I GGATG 4 cut(s) 58, 518, 618, 860
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 8 cut(s) 94, 156, 174, 235, 655, 667, 769, 1003
BstMAI GTCTC 2 cut(s) 443, 856
BstMBI GATC 8 cut(s) 91, 153, 171, 232, 652, 664, 766, 1000
BstMCI CGRYCG 1 cut(s) 769
BstMWI GCNNNNNNNGC 4 cut(s) 485, 559, 611, 911
BstNSI RCATGY 1 cut(s) 536
BstPI GGTNACC 1 cut(s) 961
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 202, 472
BstV2I GAAGAC 1 cut(s) 725
BstX2I RGATCY 3 cut(s) 153, 171, 1000
BstYI RGATCY 3 cut(s) 153, 171, 1000
Bsu15I ATCGAT 1 cut(s) 765
BsuRI GGCC 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 765
BtsCI GGATG 4 cut(s) 58, 518, 618, 860
BtsIMutI CAGTG 2 cut(s) 127, 349
Cac8I GCNNGC 1 cut(s) 907
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 2 cut(s) 183, 896
ClaI ATCGAT 1 cut(s) 765
CseI GACGC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 504
CviAII CATG 8 cut(s) 23, 132, 236, 325, 533, 683, 883, 957
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 3 cut(s) 6, 756, 828
DpnI GATC 8 cut(s) 93, 155, 173, 234, 654, 666, 768, 1002
DpnII GATC 8 cut(s) 91, 153, 171, 232, 652, 664, 766, 1000
Eam1104I CTCTTC 2 cut(s) 508, 729
EarI CTCTTC 2 cut(s) 508, 729
Eco130I CCWWGG 2 cut(s) 727, 966
Eco31I GGTCTC 1 cut(s) 856
Eco47I GGWCC 1 cut(s) 896
Eco91I GGTNACC 1 cut(s) 961
EcoO65I GGTNACC 1 cut(s) 961
EcoT14I CCWWGG 2 cut(s) 727, 966
ErhI CCWWGG 2 cut(s) 727, 966
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 8 cut(s) 26, 135, 239, 328, 536, 686, 886, 960
FatI CATG 8 cut(s) 22, 131, 235, 324, 532, 682, 882, 956
FauI CCCGC 1 cut(s) 898
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 3 cut(s) 216, 486, 612
FokI GGATG 4 cut(s) 45, 505, 605, 867
Fsp4HI GCNGC 3 cut(s) 216, 486, 612
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 531
GluI GCNGC 3 cut(s) 216, 486, 612
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 189, 800
HgaI GACGC 1 cut(s) 460
HhaI GCGC 1 cut(s) 532
Hin1II CATG 8 cut(s) 26, 135, 239, 328, 536, 686, 886, 960
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HindIII AAGCTT 2 cut(s) 270, 674
HinfI GANTC 1 cut(s) 686
HpaII CCGG 2 cut(s) 189, 800
HphI GGTGA 3 cut(s) 656, 808, 973
Hpy188I TCNGA 2 cut(s) 7, 669
Hpy188III TCNNGA 6 cut(s) 71, 86, 236, 492, 510, 565
HpyCH4III ACNGT 1 cut(s) 867
HpyCH4IV ACGT 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 4 cut(s) 485, 559, 611, 911
HpyF3I CTNAG 3 cut(s) 6, 756, 828
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 8 cut(s) 26, 135, 239, 328, 536, 686, 886, 960
HspAI GCGC 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 8 cut(s) 91, 153, 171, 232, 652, 664, 766, 1000
LguI GCTCTTC 1 cut(s) 508
LmnI GCTCC 2 cut(s) 24, 746
Lsp1109I GCAGC 2 cut(s) 202, 472
LweI GCATC 2 cut(s) 170, 527
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 961
MalI GATC 8 cut(s) 93, 155, 173, 234, 654, 666, 768, 1002
MboI GATC 8 cut(s) 91, 153, 171, 232, 652, 664, 766, 1000
MboII GAAGA 3 cut(s) 525, 730, 746
MfeI CAATTG 2 cut(s) 147, 554
MflI RGATCY 3 cut(s) 153, 171, 1000
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 6 cut(s) 27, 111, 147, 196, 554, 1007
MmeI TCCRAC 2 cut(s) 461, 874
MnlI CCTC 6 cut(s) 212, 415, 730, 772, 964, 1014
MroXI GAANNNNTTC 1 cut(s) 722
MseI TTAA 3 cut(s) 15, 278, 378
MspA1I CMGCKG 2 cut(s) 485, 822
MspCI CTTAAG 2 cut(s) 14, 277
MspI CCGG 2 cut(s) 189, 800
MunI CAATTG 2 cut(s) 147, 554
MwoI GCNNNNNNNGC 4 cut(s) 485, 559, 611, 911
NdeII GATC 8 cut(s) 91, 153, 171, 232, 652, 664, 766, 1000
NlaIII CATG 8 cut(s) 26, 135, 239, 328, 536, 686, 886, 960
NlaIV GGNNCC 2 cut(s) 184, 748
NmuCI GTSAC 1 cut(s) 961
NspI RCATGY 1 cut(s) 536
PagI TCATGA 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 508
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 1 cut(s) 686
PkrI GCNGC 3 cut(s) 217, 487, 613
Ple19I CGATCG 1 cut(s) 769
Ppu21I YACGTR 1 cut(s) 443
PspEI GGTNACC 1 cut(s) 961
PspN4I GGNNCC 2 cut(s) 184, 748
PspPI GGNCC 2 cut(s) 183, 896
PsuI RGATCY 3 cut(s) 153, 171, 1000
PvuI CGATCG 1 cut(s) 769
PvuII CAGCTG 2 cut(s) 485, 822
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 508
SaqAI TTAA 3 cut(s) 15, 278, 378
SatI GCNGC 3 cut(s) 216, 486, 612
Sau3AI GATC 8 cut(s) 91, 153, 171, 232, 652, 664, 766, 1000
Sau96I GGNCC 2 cut(s) 183, 896
ScaI AGTACT 1 cut(s) 505
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 2 cut(s) 170, 527
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 1 cut(s) 896
SmlI CTYRAG 3 cut(s) 14, 84, 277
SmoI CTYRAG 3 cut(s) 14, 84, 277
Sse9I AATT 6 cut(s) 27, 111, 147, 196, 554, 1007
SsiI CCGC 3 cut(s) 159, 611, 905
SspI AATATT 1 cut(s) 592
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 2 cut(s) 727, 966
TaaI ACNGT 1 cut(s) 867
TaiI ACGT 1 cut(s) 445
TaqI TCGA 2 cut(s) 566, 765
TasI AATT 6 cut(s) 27, 111, 147, 196, 554, 1007
TatI WGTACW 1 cut(s) 503
TauI GCSGC 1 cut(s) 614
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 3 cut(s) 15, 278, 378
Tru9I TTAA 3 cut(s) 15, 278, 378
TscAI CASTG 2 cut(s) 127, 349
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 2 cut(s) 215, 485
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 7 cut(s) 37, 39, 120, 313, 686, 699, 751
TspRI CASTG 2 cut(s) 127, 349
Vha464I CTTAAG 2 cut(s) 14, 277
VpaK11BI GGWCC 1 cut(s) 896
XbaI TCTAGA 1 cut(s) 491
XceI RCATGY 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 722
XspI CTAG 1 cut(s) 492
ZrmI AGTACT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.