Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007556

Physical Location & Seq

Genomic Coordinates Forward (+)

3104064 .. 3106296

Gene Structure 2233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGCTTTTACATGAATCTATCAAAGGATTGGACAATGACTATTTGAAGACATTGCAGGGAGAAGAGGGATTTGGAGCCATTTCTAAGTTCATGGATCGCCATTTAGAGGTTGTGTATTCTTTGAAACCAGAAACATATGTATTCACCAGCTGGACTAAGATTTTCAAGGACGTTGATTTTGGATGGGGGAGACCGTTCTGGATTGGAGTCATGGGGAAAGTTAGACCAACTTTGGGCAATCTCATAGTGTTTGTTGAAACACAATGGGGTAAGGGCATAGAAGCATGGGTGACCTTGGAGGAAAAGCAAATGGCTGTAATGGAAAAAGATCCTCAATTTTTAGCATTTACTTCTCCAAACCCACACATTTCAAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

5.9

Isoelectric Point (pI)

23.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	25 - 114	9.3e-14	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277921 RchiOBHm_Chr6g0278361 RchiOBHm_Chr7g0198771
rosa_laevigata	RLG00000013255 RLG00000013256 RLG00000013258
rosa_multiflora	Rmu_co8080108.1_g000001 Rmu_sc0003733.1_g000034 Rmu_sc0003733.1_g000035
rosa_roxburghii	Rroxscaffold_6G00389520 Rroxscaffold_7G00190810
rosa_rugosa	Rorug01G0297800 Rorug06G0112800
rosa_samantha	Rh1AG306900 Rh3CG359500 Rh3CG359600 Rh6BG253100 Rh6BG253200 Rh6CG232800 Rh6CG232900 Rh6DG220500 Rh6DG223900 Rh6DG224000 Rh7CG432700
rosa_wichuraiana	Rw3G028630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	105, 326
AfiI	CCNNNNNNNGG	2 cut(s)	109, 236
AgsI	TTSAA	5 cut(s)	49, 127, 169, 260, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	2 cut(s)	7, 153
AluI	AGCT	2 cut(s)	7, 153
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	2 cut(s)	105, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsuHPI	GGTGA	2 cut(s)	139, 304
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 236
Bse3DI	GCAATG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	2 cut(s)	109, 236
BseMI	GCAATG	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	109, 236
BsmAI	GTCTC	1 cut(s)	187
Bso31I	GGTCTC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	97, 331
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	2 cut(s)	105, 326
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	97, 331
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	87, 159
BstEII	GGTNACC	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	2 cut(s)	100, 334
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	97, 331
BstNSI	RCATGY	1 cut(s)	382
BstPI	GGTNACC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	191
CviAII	CATG	5 cut(s)	14, 94, 214, 288, 379
CviJI	RGCY	4 cut(s)	7, 80, 153, 317
CviKI_1	RGCY	4 cut(s)	7, 80, 153, 317
DdeI	CTNAG	2 cut(s)	87, 159
DpnI	GATC	2 cut(s)	99, 333
DpnII	GATC	2 cut(s)	97, 331
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	5 cut(s)	17, 97, 217, 291, 382
FaiI	YATR	9 cut(s)	15, 95, 139, 141, 215, 248, 281, 289, 380
FatI	CATG	5 cut(s)	13, 93, 213, 287, 378
FauNDI	CATATG	1 cut(s)	139
FokI	GGATG	1 cut(s)	198
Hin1II	CATG	5 cut(s)	17, 97, 217, 291, 382
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	2 cut(s)	17, 210
HphI	GGTGA	2 cut(s)	139, 304
Hpy188III	TCNNGA	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	87, 159
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	17, 97, 217, 291, 382
Kzo9I	GATC	2 cut(s)	97, 331
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	5 cut(s)	44, 139, 144, 163, 187
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	99, 333
MboI	GATC	2 cut(s)	97, 331
MboII	GAAGA	2 cut(s)	61, 77
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	61, 103, 295, 345
MspA1I	CMGCKG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	97, 331
NlaIII	CATG	5 cut(s)	17, 97, 217, 291, 382
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PspEI	GGTNACC	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	97, 331
SchI	GAGTC	1 cut(s)	219
SetI	ASST	5 cut(s)	9, 114, 155, 177, 299
Sse9I	AATT	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	177
TasI	AATT	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	17, 30, 82
XceI	RCATGY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.