Rh3CG359500

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007556
Physical Location & Seq
Reverse (-)
44581561 .. 44582046
486 bp
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UTR
Exon/CDS
Intron
Rh3CG359500.1

Sequence Viewer

Length: 486 bp
ATGTTAGATGATGCCATTGGAAATATTTTTTGGTGGGCAATAGCGGCTAACATCCCTACTAATAAGAGAGAAAGTGGTGATGATGATCAGTTGTGTGATCTGATGAAGCTTTTACATGAATCTATAAAAGGATTGGACAATGACTATTTGAAGACATTGCAGGGAGAAGAGGGATTTGGAGCCATTTCTAAGTTCATGGATCGCTATTTAGAGGTTGCGCATTCTTGGAAACCGGAAACATATGTATTCACTAGCTGGACTAAGATTTTCAAGGAAGTTGATTTTGGATGGGGGAGACCGTTCTGGATTGGGGTCATGGGGAAAGTTAGACCAACTTTGGGCAATCTCATAGTGTTTGTTGAAACACAATGGGGTAAGGGCATAGAAGCATGGGTGACCTTGGAGGAAAAGCAAATGGCTGTAATGGAAAAAGATCCTCAATTTTTAGCATTTACTTCTCCAAACCCACGCATTTCAAGCATGTGA

Protein Analysis

161

Amino Acids

18.5

Weight (kDa)

4.95

Isoelectric Point (pI)

25.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 30 - 148 1.2e-13 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 219
AciI CCGC 1 cut(s) 44
AclWI GGATC 2 cut(s) 207, 428
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 4 cut(s) 151, 271, 362, 477
AjuI GAANNNNNNNTTGG 6 cut(s) 13, 45, 159, 191, 267, 299
AluBI AGCT 2 cut(s) 109, 255
AluI AGCT 2 cut(s) 109, 255
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 207, 428
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 89, 406
BbsI GAAGAC 1 cut(s) 158
BccI CCATC 1 cut(s) 282
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 2 cut(s) 51, 293
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 289
Bsp143I GATC 4 cut(s) 85, 97, 199, 433
BspACI CCGC 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 2 cut(s) 207, 428
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 4 cut(s) 85, 97, 199, 433
BssT1I CCWWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 189, 261
BstEII GGTNACC 1 cut(s) 394
BstF5I GGATG 2 cut(s) 51, 293
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 88, 100, 202, 436
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 4 cut(s) 85, 97, 199, 433
BstMWI GCNNNNNNNGC 2 cut(s) 44, 477
BstNSI RCATGY 1 cut(s) 484
BstPI GGTNACC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 433
BstYI RGATCY 1 cut(s) 433
BtsCI GGATG 2 cut(s) 51, 293
CfoI GCGC 1 cut(s) 220
CviAII CATG 5 cut(s) 116, 196, 316, 390, 481
CviJI RGCY 5 cut(s) 47, 109, 182, 255, 419
CviKI_1 RGCY 5 cut(s) 47, 109, 182, 255, 419
DdeI CTNAG 2 cut(s) 189, 261
DpnI GATC 4 cut(s) 87, 99, 201, 435
DpnII GATC 4 cut(s) 85, 97, 199, 433
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 289
Eco91I GGTNACC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 5 cut(s) 119, 199, 319, 393, 484
FatI CATG 5 cut(s) 115, 195, 315, 389, 480
FauNDI CATATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 38, 300
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 252
FspI TGCGCA 1 cut(s) 219
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 45
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 220
Hin1II CATG 5 cut(s) 119, 199, 319, 393, 484
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 89, 406
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 477
HpyF3I CTNAG 2 cut(s) 189, 261
Hsp92II CATG 5 cut(s) 119, 199, 319, 393, 484
HspAI GCGC 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 4 cut(s) 85, 97, 199, 433
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 4 cut(s) 146, 241, 246, 289
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 394
MalI GATC 4 cut(s) 87, 99, 201, 435
MboI GATC 4 cut(s) 85, 97, 199, 433
MboII GAAGA 2 cut(s) 163, 179
MflI RGATCY 1 cut(s) 433
MluCI AATT 1 cut(s) 440
MnlI CCTC 4 cut(s) 163, 205, 397, 447
MspI CCGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 44, 477
NdeI CATATG 1 cut(s) 241
NdeII GATC 4 cut(s) 85, 97, 199, 433
NlaIII CATG 5 cut(s) 119, 199, 319, 393, 484
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 394
NsbI TGCGCA 1 cut(s) 219
NspI RCATGY 1 cut(s) 484
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 46
PspEI GGTNACC 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 433
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 4 cut(s) 85, 97, 199, 433
SetI ASST 4 cut(s) 111, 216, 257, 401
Sse9I AATT 1 cut(s) 440
SsiI CCGC 1 cut(s) 44
SspI AATATT 1 cut(s) 25
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 300
TasI AATT 1 cut(s) 440
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 119
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 3 cut(s) 119, 132, 184
XceI RCATGY 1 cut(s) 484
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.