RLG00000013255

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0007556
Physical Location & Seq
Forward (+)
28726012 .. 28726746
735 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013255

Sequence Viewer

Length: 735 bp
ATGGAGGTGACTATAATTTCTAGAGATAGCATCACACCAGCCGTTACTTCCTCTTCAGTTCATCGCCATAAGAAACCTTACCAACTTTCCATCATTGATCAGCTCTTTCCCAAAACTTACGCTCCACTGGTTTTGTTCTACCCCATAACTGACCCAAATATCAATGTTTCCCAAACCCTAGCCCACCTGAAAAAATCCCTATCATATACACTCGTTGTGTACTACCCATTTTCCGGACGGATAAAAAACAACCTTTATATTGATGATTTCGATGCGGGTGTCCCCTACCTTGAAGCCCGAATCAATTGTCGCATGTTTGAGTTTCTTAAGCTCCATGAAATTGAGCTACTCAATCAGTTCGTTCCATTCCATCCATTTTGTCAGGAAGCCAAATCTCATGATGATCTGCTGCCCTTATTAGCAATTCAAGTCAGTGTTTTTTCGTGTGGTGGAATAGCAATTGGGGTCTCCGGATCTCACAAGATCTTTGATGGGGCCACGGCAAACAATTTCCTCAAATCTTGGGCTGCTGCTTTTCGTGGGGATCATGACAAAACTCTGCTACACACTAATCTCTACCAAGCTTCATTAAGTTTTCCAGCAAAAGATGACATACCAGAAAAATATCTGTCTTTCACGGATAGCATGGTGTTCAATGGAAAACATTATATGACAAGGAGATTTGTGTTTAATGCTAAAGCCATAAACAATCTACGAGATAAAGCAAAGAGCTAG

Protein Analysis

245

Amino Acids

27.69

Weight (kDa)

8.84

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 244 1.8e-42 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 233, 470
AciI CCGC 1 cut(s) 275
AclWI GGATC 2 cut(s) 481, 552
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 233
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 3 cut(s) 293, 428, 655
AluBI AGCT 5 cut(s) 103, 331, 346, 584, 732
AluI AGCT 5 cut(s) 103, 331, 346, 584, 732
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 2 cut(s) 481, 552
Aor13HI TCCGGA 2 cut(s) 233, 470
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 3 cut(s) 409, 527, 530
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AspS9I GGNCC 1 cut(s) 495
AsuHPI GGTGA 1 cut(s) 19
BbvI GCAGC 3 cut(s) 396, 514, 517
BccI CCATC 3 cut(s) 98, 378, 485
BceAI ACGGC 2 cut(s) 26, 516
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 3 cut(s) 21, 179, 733
BfrI CTTAAG 1 cut(s) 326
BglII AGATCT 1 cut(s) 483
BisI GCNGC 3 cut(s) 410, 528, 531
BlsI GCNGC 3 cut(s) 411, 529, 532
BmgT120I GGNCC 1 cut(s) 495
BmiI GGNNCC 1 cut(s) 496
BmsI GCATC 2 cut(s) 39, 262
BsaI GGTCTC 1 cut(s) 472
BsaJI CCNNGG 1 cut(s) 498
BsaWI WCCGGW 2 cut(s) 233, 470
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 132
BseAI TCCGGA 2 cut(s) 233, 470
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 396, 514, 517
BshFI GGCC 1 cut(s) 497
BsiSI CCGG 2 cut(s) 234, 471
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 497
Bso31I GGTCTC 1 cut(s) 472
Bsp13I TCCGGA 2 cut(s) 233, 470
Bsp143I GATC 5 cut(s) 97, 403, 473, 483, 544
BspACI CCGC 1 cut(s) 275
BspANI GGCC 1 cut(s) 497
BspEI TCCGGA 2 cut(s) 233, 470
BspHI TCATGA 2 cut(s) 397, 547
BspLI GGNNCC 1 cut(s) 496
BspPI GGATC 2 cut(s) 481, 552
BspTI CTTAAG 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 472
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 5 cut(s) 97, 403, 473, 483, 544
Bst6I CTCTTC 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 5 cut(s) 100, 406, 476, 486, 547
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 5 cut(s) 97, 403, 473, 483, 544
BstNSI RCATGY 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 396, 514, 517
BstX2I RGATCY 2 cut(s) 473, 483
BstYI RGATCY 2 cut(s) 473, 483
BsuRI GGCC 1 cut(s) 497
BtgI CCRYGG 1 cut(s) 498
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 125, 439
CciI TCATGA 2 cut(s) 397, 547
Cfr13I GGNCC 1 cut(s) 495
Csp6I GTAC 1 cut(s) 220
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 5 cut(s) 313, 335, 398, 548, 646
CviQI GTAC 1 cut(s) 220
DpnI GATC 5 cut(s) 99, 405, 475, 485, 546
DpnII GATC 5 cut(s) 97, 403, 473, 483, 544
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 39
FaeI CATG 5 cut(s) 316, 338, 401, 551, 649
FaqI GGGAC 1 cut(s) 266
FatI CATG 5 cut(s) 312, 334, 397, 547, 645
FauI CCCGC 1 cut(s) 268
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 410, 528, 531
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 410, 528, 531
FspBI CTAG 3 cut(s) 21, 179, 733
GluI GCNGC 3 cut(s) 410, 528, 531
HaeIII GGCC 1 cut(s) 497
HapII CCGG 2 cut(s) 234, 471
Hin1II CATG 5 cut(s) 316, 338, 401, 551, 649
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 1 cut(s) 300
HpaII CCGG 2 cut(s) 234, 471
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 6 cut(s) 21, 234, 383, 398, 471, 548
Hpy8I GTNNAC 1 cut(s) 220
Hsp92II CATG 5 cut(s) 316, 338, 401, 551, 649
Kpn2I TCCGGA 2 cut(s) 233, 470
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 5 cut(s) 97, 403, 473, 483, 544
LmnI GCTCC 2 cut(s) 127, 336
LpnPI CCDG 8 cut(s) 51, 113, 200, 247, 368, 484, 612, 630
Lsp1109I GCAGC 3 cut(s) 396, 514, 517
LweI GCATC 2 cut(s) 39, 262
MaeI CTAG 3 cut(s) 21, 179, 733
MaeIII GTNAC 2 cut(s) 7, 43
MalI GATC 5 cut(s) 99, 405, 475, 485, 546
MboI GATC 5 cut(s) 97, 403, 473, 483, 544
MboII GAAGA 1 cut(s) 45
MfeI CAATTG 2 cut(s) 304, 459
MflI RGATCY 2 cut(s) 473, 483
MluCI AATT 6 cut(s) 15, 304, 339, 423, 459, 508
MnlI CCTC 2 cut(s) 61, 524
MroI TCCGGA 2 cut(s) 233, 470
MseI TTAA 3 cut(s) 327, 590, 690
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 2 cut(s) 234, 471
MunI CAATTG 2 cut(s) 304, 459
NdeII GATC 5 cut(s) 97, 403, 473, 483, 544
NlaIII CATG 5 cut(s) 316, 338, 401, 551, 649
NlaIV GGNNCC 1 cut(s) 496
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 316
PagI TCATGA 2 cut(s) 397, 547
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 3 cut(s) 411, 529, 532
PspN4I GGNNCC 1 cut(s) 496
PspPI GGNCC 1 cut(s) 495
PsuI RGATCY 2 cut(s) 473, 483
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SaqAI TTAA 3 cut(s) 327, 590, 690
SatI GCNGC 3 cut(s) 410, 528, 531
Sau3AI GATC 5 cut(s) 97, 403, 473, 483, 544
Sau96I GGNCC 1 cut(s) 495
SfaNI GCATC 2 cut(s) 39, 262
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 6 cut(s) 15, 304, 339, 423, 459, 508
SsiI CCGC 1 cut(s) 275
SspMI CTAG 3 cut(s) 21, 179, 733
TaqI TCGA 1 cut(s) 270
TasI AATT 6 cut(s) 15, 304, 339, 423, 459, 508
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 3 cut(s) 327, 590, 690
Tru9I TTAA 3 cut(s) 327, 590, 690
TscAI CASTG 2 cut(s) 132, 439
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 3 cut(s) 409, 527, 530
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 3 cut(s) 50, 351, 576
TspGWI ACGGA 2 cut(s) 253, 653
TspRI CASTG 2 cut(s) 132, 439
Vha464I CTTAAG 1 cut(s) 326
XbaI TCTAGA 1 cut(s) 20
XceI RCATGY 1 cut(s) 316
XspI CTAG 3 cut(s) 21, 179, 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.