Rh6DG223900

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007556
Physical Location & Seq
Forward (+)
40195955 .. 40197027
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG223900.1

Sequence Viewer

Length: 894 bp
ATGGAGGTGACTATTATTTCCAGAGATACCATCATACCAGCCGCTACTTCCTCTTCAGTTCATCGTCCTAAGAAACCTTACCAACTTTGTATCTTCGATCAGCTCTTTCCCACAACTTACGTTCCAGTGGTTTTCTTCTACCCCATTTTTGATATCAATGTTTCCCAAACCCTAGCCCACCTGAAAAGCTCCCTATCATATACACTCGGTGTGTACTACCCATTTTCAGGACGGACGAAAAACAACCTTTGTATTGATGATTTCGATGCGGGTGTCCCCTACCTTGAAGCCCGAATCAATTATCGCCTGTTTGAGTTTCTTAAGCTCCATGAAATCGAGCTACTCAATCAGTTCGTTCCATTCCATCCATTTCGTCAGGAAACCGAATCTCATGATGATCCACTACCCTTATTAGCAGTTCAAGTTAGTGTTTTTTCTTGTGGTGGAATAGCAATTGGGGTCTCCCTATCTCACAAGATATTTGATGGGGACACGTCAAACAATTTCCTTAATTCTTGGTCTGCTGTTTTTCGTGGGGATCATGACAAAATTCTGCTACACACTAATCTCTACCAAGCTTCATTAAGTTTTCCAGCAAAAGATGACATACCAGAAAAATATATGTCTTTCATGGGTAGCATTCTGTTCAGGGGGAAAAGTTATATGACAAGGAGATTTGTGTTTAATGCTAAAGCCATAAACATTCTACGAGACAAAGCAAAGAGCGAGGTCGTGCCCAATCCAACACGTATAGAGACGCTAACTTGTTTTCTTTGGAAACACGCTACAGCTGCTTCTAGATATGGTTTGAAACTTTCACAATGCATGCATAATACGTGTGTGTGTATTTATATTTATATACAGTCTTTCTTAGCTAAGAACATCCTAACATAA

Protein Analysis

297

Amino Acids

33.91

Weight (kDa)

8.58

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 267 4.3e-48 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 269
AclWI GGATC 2 cut(s) 392, 546
AcsI RAATTY 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 209
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 227
AflII CTTAAG 1 cut(s) 320
AflIII ACRYGT 3 cut(s) 492, 746, 836
AgsI TTSAA 3 cut(s) 287, 422, 811
AjiI CACGTC 1 cut(s) 495
AluBI AGCT 7 cut(s) 103, 189, 325, 340, 578, 791, 875
AluI AGCT 7 cut(s) 103, 189, 325, 340, 578, 791, 875
Alw26I GTCTC 3 cut(s) 466, 705, 749
AlwI GGATC 2 cut(s) 392, 546
ApeKI GCWGC 1 cut(s) 791
ApoI RAATTY 1 cut(s) 549
AsuHPI GGTGA 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 738
BbvI GCAGC 1 cut(s) 778
BccI CCATC 3 cut(s) 38, 372, 479
BcoDI GTCTC 3 cut(s) 466, 705, 749
BfaI CTAG 2 cut(s) 173, 798
BfmI CTRYAG 1 cut(s) 786
BfrI CTTAAG 1 cut(s) 320
BisI GCNGC 2 cut(s) 42, 792
BlsI GCNGC 2 cut(s) 43, 793
BmgBI CACGTC 1 cut(s) 495
BmsI GCATC 1 cut(s) 256
BsaAI YACGTR 2 cut(s) 749, 837
BsaI GGTCTC 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 364, 882
BseLI CCNNNNNNNGG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 738
BseXI GCAGC 1 cut(s) 778
BslFI GGGAC 2 cut(s) 260, 503
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 3 cut(s) 466, 705, 749
BsmBI CGTCTC 1 cut(s) 749
BsmFI GGGAC 2 cut(s) 260, 503
BsmI GAATGC 1 cut(s) 639
Bso31I GGTCTC 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 738
Bsp143I GATC 3 cut(s) 97, 397, 538
BspACI CCGC 2 cut(s) 42, 269
BspHI TCATGA 2 cut(s) 391, 541
BspPI GGATC 2 cut(s) 392, 546
BspTI CTTAAG 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 466
BsrI ACTGG 1 cut(s) 125
BssMI GATC 3 cut(s) 97, 397, 538
Bst4CI ACNGT 1 cut(s) 864
Bst6I CTCTTC 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 320
BstBAI YACGTR 2 cut(s) 749, 837
BstC8I GCNNGC 1 cut(s) 827
BstDEI CTNAG 3 cut(s) 69, 871, 876
BstF5I GGATG 2 cut(s) 364, 882
BstKTI GATC 3 cut(s) 100, 400, 541
BstMAI GTCTC 3 cut(s) 466, 705, 749
BstMBI GATC 3 cut(s) 97, 397, 538
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstNSI RCATGY 1 cut(s) 829
BstSFI CTRYAG 1 cut(s) 786
BstSLI GKGCMC 1 cut(s) 738
BstV1I GCAGC 1 cut(s) 778
BtrI CACGTC 1 cut(s) 495
BtsCI GGATG 2 cut(s) 364, 882
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 827
CciI TCATGA 2 cut(s) 391, 541
CseI GACGC 1 cut(s) 766
Csp6I GTAC 1 cut(s) 214
CviAII CATG 5 cut(s) 329, 392, 542, 631, 826
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 69, 871, 876
DpnI GATC 3 cut(s) 99, 399, 540
DpnII GATC 3 cut(s) 97, 397, 538
DraIII CACNNNGTG 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 466
Eco32I GATATC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 154
EcoT22I ATGCAT 2 cut(s) 827, 831
Esp3I CGTCTC 1 cut(s) 749
FaeI CATG 5 cut(s) 332, 395, 545, 634, 829
FaqI GGGAC 2 cut(s) 260, 503
FatI CATG 5 cut(s) 328, 391, 541, 630, 825
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 42, 792
FokI GGATG 2 cut(s) 351, 869
Fsp4HI GCNGC 2 cut(s) 42, 792
FspBI CTAG 2 cut(s) 173, 798
GluI GCNGC 2 cut(s) 42, 792
HgaI GACGC 1 cut(s) 766
Hin1II CATG 5 cut(s) 332, 395, 545, 634, 829
HindIII AAGCTT 1 cut(s) 576
HinfI GANTC 2 cut(s) 294, 386
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 6 cut(s) 21, 228, 377, 392, 542, 798
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 864
HpyCH4IV ACGT 4 cut(s) 120, 494, 748, 836
HpyCH4V TGCA 2 cut(s) 825, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 3 cut(s) 69, 871, 876
HpySE526I ACGT 4 cut(s) 120, 494, 748, 836
Hsp92II CATG 5 cut(s) 332, 395, 545, 634, 829
Kzo9I GATC 3 cut(s) 97, 397, 538
LmnI GCTCC 2 cut(s) 194, 330
Lsp1109I GCAGC 1 cut(s) 778
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 173, 798
MaeII ACGT 4 cut(s) 120, 494, 748, 836
MaeIII GTNAC 1 cut(s) 7
MalI GATC 3 cut(s) 99, 399, 540
MboI GATC 3 cut(s) 97, 397, 538
MboII GAAGA 3 cut(s) 45, 85, 127
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 5 cut(s) 298, 453, 502, 511, 549
MmeI TCCRAC 1 cut(s) 767
MnlI CCTC 2 cut(s) 61, 721
Mph1103I ATGCAT 2 cut(s) 827, 831
MseI TTAA 4 cut(s) 321, 510, 584, 684
MspA1I CMGCKG 1 cut(s) 791
MspCI CTTAAG 1 cut(s) 320
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 639
MwoI GCNNNNNNNGC 1 cut(s) 791
NdeII GATC 3 cut(s) 97, 397, 538
NlaIII CATG 5 cut(s) 332, 395, 545, 634, 829
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 2 cut(s) 827, 831
NspI RCATGY 1 cut(s) 829
PaeI GCATGC 1 cut(s) 829
PagI TCATGA 2 cut(s) 391, 541
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 2 cut(s) 294, 386
PkrI GCNGC 2 cut(s) 43, 793
Ppu21I YACGTR 2 cut(s) 749, 837
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 4 cut(s) 321, 510, 584, 684
SatI GCNGC 2 cut(s) 42, 792
Sau3AI GATC 3 cut(s) 97, 397, 538
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 786
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 829
Sse9I AATT 5 cut(s) 298, 453, 502, 511, 549
SsiI CCGC 2 cut(s) 42, 269
SspMI CTAG 2 cut(s) 173, 798
TaaI ACNGT 1 cut(s) 864
TaiI ACGT 4 cut(s) 123, 497, 751, 839
TaqI TCGA 3 cut(s) 96, 264, 336
TasI AATT 5 cut(s) 298, 453, 502, 511, 549
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 294, 386
Tru1I TTAA 4 cut(s) 321, 510, 584, 684
Tru9I TTAA 4 cut(s) 321, 510, 584, 684
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 791
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 4 cut(s) 50, 345, 570, 619
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 132
Vha464I CTTAAG 1 cut(s) 320
XapI RAATTY 1 cut(s) 549
XbaI TCTAGA 1 cut(s) 797
XceI RCATGY 1 cut(s) 829
XspI CTAG 2 cut(s) 173, 798
Zsp2I ATGCAT 2 cut(s) 827, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.