Rh6CG232800

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007556
Physical Location & Seq
Forward (+)
39616269 .. 39617378
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG232800.1

Sequence Viewer

Length: 981 bp
ATGGAGGTGACTATTATTTCCAGAGATACCATCATACCAGCCGCTACTTCCTCTTCAGTTCATCGCCTTAAGAAACCTTACCAACTTTGTATCTTCGATCAGCTCTTTCCCATAACTTACGTTCCATTGGTTTTCTTCTACCCCATTTTTGATATCAATGTTTCCCAAACCCTAGCCCACCTGAAAAGCTCCCTATCATATATACTCGGTGTGTACTACCCATTTTCAGGACGGACGAAAAACAACCTTTGTATTGATGATTTCGATGCGGGTGTCCCCTACCTTGAAGCCCGAATCAATTATCGCCTGTTTGAGTTTCTTAAGCTCCATGAAATTGAGCTACTCAATCAGTTCGTTCCATTCCATCCATTTCGTCAGGAAACTGAATCTCATGATGATCCACTACCTTTATTAGCAGTTCAAGTTAGTGTTTTTTCTTGTGGTGGAATAGCAATTGGGGTCTCCCTATCTCACAAGATATTTGATGGGGACACGGCAAACAATTTCCTTAAATCTTGGTCTGCTGTTTTTCGTGGGGATCATGACAAAATTATGCTACACACTAATCTCTACCAAGCTTCATTAAGTTTTCCAGCAAAAGATGACATACCAGAAAAATATATGTCTTTCATGGGTAGCATTCTGTTCAGGGGGAAAAGTTATATGACAAGGAGATTTGTGTTTAATGCTAAAGCCATAAACATTCTACGAGACAAAGCAAAGAGCGAGGTCGTGCCCAATCCAACACGTATAGAGACGCTAACTTGTTTTCTTTGGAAACACGCTACAGCTGCTTCTAGATATGGTTTGAAACTTTCACAATGCATGCATAATATGTGTGTGTGTGTGTGTGTATTTATATTTATATACAGTCTTTCTTGGCTAAGAACATCCTTACGTAAGCTTAGGTACGAATTTCCAGTTTTTGGCCACTTTTCGATCACATATTCACATCTTAACCATTCAGTTTTTAGCTGCTAA

Protein Analysis

326

Amino Acids

37.52

Weight (kDa)

8.87

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 268 3.7e-48 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 926
AciI CCGC 2 cut(s) 42, 269
AclWI GGATC 2 cut(s) 392, 546
AcoI YGGCCR 1 cut(s) 928
AcsI RAATTY 1 cut(s) 914
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 2 cut(s) 215, 911
AfiI CCNNNNNNNGG 2 cut(s) 227, 926
AflII CTTAAG 2 cut(s) 68, 320
AflIII ACRYGT 1 cut(s) 746
AgsI TTSAA 3 cut(s) 287, 422, 811
AluBI AGCT 8 cut(s) 103, 189, 325, 340, 578, 791, 904, 975
AluI AGCT 8 cut(s) 103, 189, 325, 340, 578, 791, 904, 975
Alw26I GTCTC 3 cut(s) 466, 705, 749
AlwI GGATC 2 cut(s) 392, 546
AoxI GGCC 1 cut(s) 928
ApeKI GCWGC 2 cut(s) 791, 975
ApoI RAATTY 1 cut(s) 914
AsuHPI GGTGA 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 738
BalI TGGCCA 1 cut(s) 930
BbvI GCAGC 2 cut(s) 778, 962
BccI CCATC 3 cut(s) 38, 372, 479
BceAI ACGGC 1 cut(s) 510
BcoDI GTCTC 3 cut(s) 466, 705, 749
BfaI CTAG 2 cut(s) 173, 798
BfmI CTRYAG 1 cut(s) 786
BfrI CTTAAG 2 cut(s) 68, 320
BisI GCNGC 3 cut(s) 42, 792, 976
BlsI GCNGC 3 cut(s) 43, 793, 977
BmsI GCATC 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 905
BsaAI YACGTR 2 cut(s) 749, 899
BsaI GGTCTC 1 cut(s) 466
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 926
Bse1I ACTGG 1 cut(s) 920
BseGI GGATG 2 cut(s) 364, 890
BseLI CCNNNNNNNGG 2 cut(s) 227, 926
BseNI ACTGG 1 cut(s) 920
BseSI GKGCMC 1 cut(s) 738
BseXI GCAGC 2 cut(s) 778, 962
BshFI GGCC 1 cut(s) 930
BslFI GGGAC 2 cut(s) 260, 503
BslI CCNNNNNNNGG 2 cut(s) 227, 926
BsmAI GTCTC 3 cut(s) 466, 705, 749
BsmBI CGTCTC 1 cut(s) 749
BsmFI GGGAC 2 cut(s) 260, 503
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 1 cut(s) 930
Bso31I GGTCTC 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 738
Bsp143I GATC 4 cut(s) 97, 397, 538, 939
BspACI CCGC 2 cut(s) 42, 269
BspANI GGCC 1 cut(s) 930
BspHI TCATGA 2 cut(s) 391, 541
BspPI GGATC 2 cut(s) 392, 546
BspTI CTTAAG 2 cut(s) 68, 320
BspTNI GGTCTC 1 cut(s) 466
BsrI ACTGG 1 cut(s) 920
BssMI GATC 4 cut(s) 97, 397, 538, 939
Bst4CI ACNGT 1 cut(s) 872
Bst6I CTCTTC 1 cut(s) 58
BstAFI CTTAAG 2 cut(s) 68, 320
BstBAI YACGTR 2 cut(s) 749, 899
BstC8I GCNNGC 1 cut(s) 827
BstDEI CTNAG 2 cut(s) 884, 905
BstF5I GGATG 2 cut(s) 364, 890
BstKTI GATC 4 cut(s) 100, 400, 541, 942
BstMAI GTCTC 3 cut(s) 466, 705, 749
BstMBI GATC 4 cut(s) 97, 397, 538, 939
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstNSI RCATGY 1 cut(s) 829
BstSFI CTRYAG 1 cut(s) 786
BstSLI GKGCMC 1 cut(s) 738
BstSNI TACGTA 1 cut(s) 899
BstV1I GCAGC 2 cut(s) 778, 962
BsuRI GGCC 1 cut(s) 930
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 364, 890
Cac8I GCNNGC 1 cut(s) 827
CciI TCATGA 2 cut(s) 391, 541
CseI GACGC 1 cut(s) 766
Csp6I GTAC 2 cut(s) 214, 910
CviAII CATG 5 cut(s) 329, 392, 542, 631, 826
CviQI GTAC 2 cut(s) 214, 910
DdeI CTNAG 2 cut(s) 884, 905
DpnI GATC 4 cut(s) 99, 399, 540, 941
DpnII GATC 4 cut(s) 97, 397, 538, 939
EaeI YGGCCR 1 cut(s) 928
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco105I TACGTA 1 cut(s) 899
Eco31I GGTCTC 1 cut(s) 466
Eco32I GATATC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 39
EcoRV GATATC 1 cut(s) 154
EcoT22I ATGCAT 2 cut(s) 827, 831
Esp3I CGTCTC 1 cut(s) 749
FaeI CATG 5 cut(s) 332, 395, 545, 634, 829
FaqI GGGAC 2 cut(s) 260, 503
FatI CATG 5 cut(s) 328, 391, 541, 630, 825
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 42, 792, 976
FokI GGATG 2 cut(s) 351, 877
Fsp4HI GCNGC 3 cut(s) 42, 792, 976
FspBI CTAG 2 cut(s) 173, 798
GluI GCNGC 3 cut(s) 42, 792, 976
HaeIII GGCC 1 cut(s) 930
HgaI GACGC 1 cut(s) 766
Hin1II CATG 5 cut(s) 332, 395, 545, 634, 829
HindIII AAGCTT 2 cut(s) 576, 902
HinfI GANTC 2 cut(s) 294, 386
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 6 cut(s) 21, 228, 377, 392, 542, 798
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 872
HpyCH4IV ACGT 3 cut(s) 120, 748, 898
HpyCH4V TGCA 2 cut(s) 825, 829
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 2 cut(s) 884, 905
HpySE526I ACGT 3 cut(s) 120, 748, 898
Hsp92II CATG 5 cut(s) 332, 395, 545, 634, 829
Kzo9I GATC 4 cut(s) 97, 397, 538, 939
LmnI GCTCC 2 cut(s) 194, 330
Lsp1109I GCAGC 2 cut(s) 778, 962
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 173, 798
MaeII ACGT 3 cut(s) 120, 748, 898
MaeIII GTNAC 1 cut(s) 7
MalI GATC 4 cut(s) 99, 399, 540, 941
MboI GATC 4 cut(s) 97, 397, 538, 939
MboII GAAGA 3 cut(s) 45, 85, 127
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 1 cut(s) 738
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 6 cut(s) 298, 333, 453, 502, 549, 914
MluNI TGGCCA 1 cut(s) 930
MmeI TCCRAC 1 cut(s) 767
MnlI CCTC 2 cut(s) 61, 721
Mox20I TGGCCA 1 cut(s) 930
Mph1103I ATGCAT 2 cut(s) 827, 831
MscI TGGCCA 1 cut(s) 930
MseI TTAA 6 cut(s) 69, 321, 510, 584, 684, 957
Msp20I TGGCCA 1 cut(s) 930
MspA1I CMGCKG 1 cut(s) 791
MspCI CTTAAG 2 cut(s) 68, 320
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 639
MwoI GCNNNNNNNGC 1 cut(s) 791
NdeII GATC 4 cut(s) 97, 397, 538, 939
NlaIII CATG 5 cut(s) 332, 395, 545, 634, 829
NmuCI GTSAC 1 cut(s) 7
NsiI ATGCAT 2 cut(s) 827, 831
NspI RCATGY 1 cut(s) 829
PaeI GCATGC 1 cut(s) 829
PagI TCATGA 2 cut(s) 391, 541
PctI GAATGC 1 cut(s) 639
PfeI GAWTC 2 cut(s) 294, 386
PflMI CCANNNNNTGG 1 cut(s) 926
PkrI GCNGC 3 cut(s) 43, 793, 977
Ppu21I YACGTR 2 cut(s) 749, 899
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 2 cut(s) 215, 911
RsaNI GTAC 2 cut(s) 214, 910
SaqAI TTAA 6 cut(s) 69, 321, 510, 584, 684, 957
SatI GCNGC 3 cut(s) 42, 792, 976
Sau3AI GATC 4 cut(s) 97, 397, 538, 939
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 786
SmlI CTYRAG 2 cut(s) 68, 320
SmoI CTYRAG 2 cut(s) 68, 320
SnaBI TACGTA 1 cut(s) 899
SphI GCATGC 1 cut(s) 829
Sse9I AATT 6 cut(s) 298, 333, 453, 502, 549, 914
SsiI CCGC 2 cut(s) 42, 269
SspMI CTAG 2 cut(s) 173, 798
TaaI ACNGT 1 cut(s) 872
TaiI ACGT 3 cut(s) 123, 751, 901
TaqI TCGA 3 cut(s) 96, 264, 938
TasI AATT 6 cut(s) 298, 333, 453, 502, 549, 914
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 294, 386
Tru1I TTAA 6 cut(s) 69, 321, 510, 584, 684, 957
Tru9I TTAA 6 cut(s) 69, 321, 510, 584, 684, 957
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 2 cut(s) 791, 975
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 4 cut(s) 50, 345, 570, 619
TspGWI ACGGA 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 926
Vha464I CTTAAG 2 cut(s) 68, 320
XapI RAATTY 1 cut(s) 914
XbaI TCTAGA 1 cut(s) 797
XceI RCATGY 1 cut(s) 829
XspI CTAG 2 cut(s) 173, 798
Zsp2I ATGCAT 2 cut(s) 827, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.