Rh6CG232900

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007556
Physical Location & Seq
Forward (+)
39618275 .. 39618760
486 bp
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UTR
Exon/CDS
Intron
Rh6CG232900.1

Sequence Viewer

Length: 486 bp
ATGTTAGATAACGCCATTGGAAATATTCTTTGGTGGGCAACAGCAACTAACATCCCTACTAATAAGAGAGAAACTGGTGATGATGATCAGTTGTGTGATTTGATGAAGCTTTTACATGAATCTATCAAAAGATTGGACAAAGACTATTTGAAGACATTGCAGGGAGAAAAGGGATTTGGAGCCATTTCTGAGTTCATCGATCGCCAAATAGAGGTTGTGTATTCTTTGGAACCGGAAACATATATATTCACCAGCTGGACTAAGATTTTGAAGGAAGTTGATTTTGGATGGGGGAGACCATTTTGGATTGGGGTCAAGGGGAAAGTAGGATCAACTCTTGGCAATCACACGGTGTTCGTTGAAACACAATGGGGCAAGGGCATAGAAGCATGGGTGACCTTGGAGGAAAAGCAAATGGCTGTAATGGAAAATGATCCTCAGTTTTTAGCATTTACTTCTCCAAACCCACGCATTTCAAGCATGTGA

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

4.96

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 30 - 148 4e-13 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 337, 428
AdeI CACNNNGTG 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 4 cut(s) 151, 271, 362, 477
AjuI GAANNNNNNNTTGG 6 cut(s) 13, 45, 159, 191, 267, 299
AluBI AGCT 2 cut(s) 109, 255
AluI AGCT 2 cut(s) 109, 255
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 337, 428
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AsuHPI GGTGA 3 cut(s) 89, 241, 406
BbsI GAAGAC 1 cut(s) 158
BccI CCATC 1 cut(s) 282
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 181, 231
BpiI GAAGAC 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 84
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 2 cut(s) 51, 293
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 180, 452
BseNI ACTGG 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 202
BshVI ATCGAT 1 cut(s) 198
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 289
Bsp143I GATC 4 cut(s) 85, 199, 329, 433
BspCNI CTCAG 2 cut(s) 181, 451
BspDI ATCGAT 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 181, 231
BspPI GGATC 2 cut(s) 337, 428
BspTNI GGTCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 4 cut(s) 85, 199, 329, 433
BssT1I CCWWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 189, 261, 438
BstEII GGTNACC 1 cut(s) 394
BstF5I GGATG 2 cut(s) 51, 293
BstKTI GATC 4 cut(s) 88, 202, 332, 436
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 4 cut(s) 85, 199, 329, 433
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 484
BstPI GGTNACC 1 cut(s) 394
BstV2I GAAGAC 1 cut(s) 158
Bsu15I ATCGAT 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 198
BtsCI GGATG 2 cut(s) 51, 293
ClaI ATCGAT 1 cut(s) 198
CviAII CATG 3 cut(s) 116, 390, 481
CviJI RGCY 4 cut(s) 109, 182, 255, 419
CviKI_1 RGCY 4 cut(s) 109, 182, 255, 419
DdeI CTNAG 3 cut(s) 189, 261, 438
DpnI GATC 4 cut(s) 87, 201, 331, 435
DpnII GATC 4 cut(s) 85, 199, 329, 433
DraIII CACNNNGTG 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 289
Eco91I GGTNACC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 394
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 3 cut(s) 119, 393, 484
FaiI YATR 7 cut(s) 117, 241, 243, 245, 383, 391, 482
FatI CATG 3 cut(s) 115, 389, 480
FbaI TGATCA 1 cut(s) 85
FokI GGATG 2 cut(s) 38, 300
HapII CCGG 1 cut(s) 233
Hin1II CATG 3 cut(s) 119, 393, 484
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 233
HphI GGTGA 3 cut(s) 89, 241, 406
Hpy188I TCNGA 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 3 cut(s) 189, 261, 438
Hsp92II CATG 3 cut(s) 119, 393, 484
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 4 cut(s) 85, 199, 329, 433
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 5 cut(s) 60, 146, 241, 246, 265
MaeIII GTNAC 1 cut(s) 394
MalI GATC 4 cut(s) 87, 201, 331, 435
MboI GATC 4 cut(s) 85, 199, 329, 433
MboII GAAGA 1 cut(s) 163
MnlI CCTC 3 cut(s) 205, 397, 447
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 477
NdeII GATC 4 cut(s) 85, 199, 329, 433
NlaIII CATG 3 cut(s) 119, 393, 484
NlaIV GGNNCC 2 cut(s) 181, 231
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 484
PfeI GAWTC 1 cut(s) 119
Ple19I CGATCG 1 cut(s) 202
PspEI GGTNACC 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 181, 231
PvuI CGATCG 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 255
Sau3AI GATC 4 cut(s) 85, 199, 329, 433
SetI ASST 4 cut(s) 111, 216, 257, 401
SspI AATATT 1 cut(s) 25
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 352
TaqI TCGA 1 cut(s) 198
TfiI GAWTC 1 cut(s) 119
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 3 cut(s) 119, 132, 184
XceI RCATGY 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.