Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

4050673 .. 4060238

Gene Structure 9566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGATTGCTCGGATTGATCTTGGAGTTGAAATCCCACTCAAACAGATTCCAATGGTCCAAGAGAAAATAATTCAAGTGTGTGGGCAGCTAAACAATCAAGTAGTTGTAGCTTCTCAACTACTTGAATCAATGATTGAATACCCAACCCCAACACACGTTGAGGAAAGGATATTTCTTCCTTGCCTTGGTGGTGAATTGGACAGTGAGTGTGATGAACCAGTTTCAATGAAACTGTCTACACACAATCAAGAAGAGCTACTAGATTGCAAAACACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

92

Amino Acids

10.33

Weight (kDa)

4.41

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK	PF00224	1 - 54	1.8e-15	Pyruvate kinase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	5 cut(s)	29, 74, 125, 137, 225
AluBI	AGCT	3 cut(s)	88, 110, 256
AluI	AGCT	3 cut(s)	88, 110, 256
ApeKI	GCWGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	203, 234
Bst6I	CTCTTC	1 cut(s)	246
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	55
CviJI	RGCY	3 cut(s)	88, 110, 256
CviKI_1	RGCY	3 cut(s)	88, 110, 256
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaiI	YATR	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	86
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	46, 125
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	237
HpyCH4III	ACNGT	2 cut(s)	203, 234
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	16
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	1 cut(s)	231
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	156
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	2 cut(s)	167, 263
MluCI	AATT	2 cut(s)	69, 194
MnlI	CCTC	1 cut(s)	154
NdeII	GATC	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	46, 125
PkrI	GCNGC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	55
SetI	ASST	4 cut(s)	90, 112, 159, 258
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	69, 194
SspMI	CTAG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	203, 234
TaiI	ACGT	1 cut(s)	159
TasI	AATT	2 cut(s)	69, 194
TfiI	GAWTC	2 cut(s)	46, 125
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	228, 242
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.