Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

36156560 .. 36172079

Gene Structure 15520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG296400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCCAAATAAGCAGACATCTAGAGTTTTGGTGAAAATTGAGAGCTTCAAAGCCATTCACAAGCAGGAAAAAATCATTGAAGCTTCCTATGGAGTCATGATTGCTCAGGTTGATCATGTAGCTTCTCAACTACTTGAATCAATGATTGAATACCCAACCCCAACACACGTTGAGGAAAGGATATTTTTTCCTTGCCTTGGTGGTGAATTGGACAGTGAGTGTAATGAACCAGTTTCAATGAAACCCGTGCTTCCCCATCATAGACTACACACAATCAAGAGGAGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

96

Amino Acids

11.01

Weight (kDa)

6.58

Isoelectric Point (pI)

73.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	49, 80, 137, 149, 237
AluBI	AGCT	4 cut(s)	45, 83, 122, 285
AluI	AGCT	4 cut(s)	45, 83, 122, 285
AsuHPI	GGTGA	2 cut(s)	43, 215
BccI	CCATC	1 cut(s)	264
BclI	TGATCA	1 cut(s)	112
BfaI	CTAG	2 cut(s)	21, 289
Bpu10I	CCTNAGC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	220
CciI	TCATGA	1 cut(s)	96
CviAII	CATG	2 cut(s)	97, 116
CviJI	RGCY	5 cut(s)	45, 53, 83, 122, 285
CviKI_1	RGCY	5 cut(s)	45, 53, 83, 122, 285
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	2 cut(s)	100, 119
FaiI	YATR	4 cut(s)	90, 98, 117, 261
FatI	CATG	2 cut(s)	96, 115
FbaI	TGATCA	1 cut(s)	112
FspBI	CTAG	2 cut(s)	21, 289
Hin1II	CATG	2 cut(s)	100, 119
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	2 cut(s)	93, 137
HphI	GGTGA	2 cut(s)	43, 215
Hpy188III	TCNNGA	3 cut(s)	21, 97, 277
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	100, 119
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	3 cut(s)	50, 92, 243
MaeI	CTAG	2 cut(s)	21, 289
MaeII	ACGT	1 cut(s)	168
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MluCI	AATT	2 cut(s)	36, 206
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	166, 273
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	100, 119
PagI	TCATGA	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	102
SetI	ASST	6 cut(s)	47, 85, 111, 124, 171, 287
Sse9I	AATT	2 cut(s)	36, 206
SspMI	CTAG	2 cut(s)	21, 289
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	171
TasI	AATT	2 cut(s)	36, 206
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	240, 254
TspRI	CASTG	1 cut(s)	220
XbaI	TCTAGA	1 cut(s)	20
XspI	CTAG	2 cut(s)	21, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.