Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001918.1

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

80968 .. 83514

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001918.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgattgctcggattgatcttggagttgaaatcccactcaaacagattccaatggtccaagagaaaataattcaagtgtgtgggcagctaaacaatcaagtatttgtagcttctcaactacttgaatcaatgattgaatacccaaccccaacacacgttgaggaaaggatatttcttccttgccttggtggtgaattggacagtgagtgtgatgaaccatttgccattgcttttttgcactgtggttggtttccgcgtggctgtgtttgcttgctccacgaagagagaggtaagacagatgagagagccagaaaggtcaagaaggatcgagcaagtgcagtgtcaagtgcatccatcaacctctcggatacgaacgttgggctgataacaggctggtggggtggtgatattgctgagcccttgcgctctttaaatcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

146

Amino Acids

16.26

Weight (kDa)

5.18

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	256
AciI	CCGC	1 cut(s)	254
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	4 cut(s)	29, 74, 125, 137
AluBI	AGCT	2 cut(s)	88, 110
AluI	AGCT	2 cut(s)	88, 110
AlwI	GGATC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	203, 416
AvaII	GGWCC	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BanII	GRGCYC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	362
BciVI	GTATCC	1 cut(s)	361
BfuI	GTATCC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	86
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmsI	GCATC	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	16, 325
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	16, 325
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	203, 242
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	19, 328
BstMBI	GATC	2 cut(s)	16, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	208, 238, 345
Cac8I	GCNNGC	1 cut(s)	272
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	55
CviJI	RGCY	7 cut(s)	88, 110, 261, 308, 382, 393, 418
CviKI_1	RGCY	7 cut(s)	88, 110, 261, 308, 382, 393, 418
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	2 cut(s)	18, 327
DpnII	GATC	2 cut(s)	16, 325
DraI	TTTAAA	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	86
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	46, 125
HphI	GGTGA	2 cut(s)	203, 416
Hpy188I	TCNGA	2 cut(s)	12, 367
Hpy188III	TCNNGA	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	203, 242
HpyCH4IV	ACGT	2 cut(s)	156, 375
HpyCH4V	TGCA	3 cut(s)	238, 338, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	2 cut(s)	156, 375
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	16, 325
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	3 cut(s)	322, 375, 379
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	359
MaeII	ACGT	2 cut(s)	156, 375
MalI	GATC	2 cut(s)	18, 327
MboI	GATC	2 cut(s)	16, 325
MboII	GAAGA	2 cut(s)	167, 293
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	2 cut(s)	69, 194
MnlI	CCTC	3 cut(s)	154, 281, 371
MseI	TTAA	1 cut(s)	431
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeII	GATC	2 cut(s)	16, 325
PfeI	GAWTC	2 cut(s)	46, 125
PkrI	GCNGC	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	16, 325
Sau96I	GGNCC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	420
SetI	ASST	7 cut(s)	90, 112, 159, 292, 318, 363, 378
SfaNI	GCATC	1 cut(s)	359
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	69, 194
SsiI	CCGC	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	203, 242
TaiI	ACGT	2 cut(s)	159, 378
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	69, 194
TfiI	GAWTC	2 cut(s)	46, 125
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	3 cut(s)	208, 245, 345
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	3 cut(s)	208, 245, 345
VpaK11BI	GGWCC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.