Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

43993494 .. 43997234

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTATTGATATGGTTATTGTTGCTGCAGTCCAAGAAAGGCAAAATAGGTCCTTTGACTGCAAATGAGTTGAGGCAGAAAGCTAGAGAAAGAGCTGAATATCAAAGGAAAAAGATGGCTGCATTGAAGGCATCAAGGTTGGCAGCAAACATGCCTGCTTCAACAAGGGTTTCGCAGAGAAGGTCGGTGAGAAAAAGAGACAGAAGAGCTGAACCTGCCGGGTGGATAGTAAGACATCACCTTAATCTCATCAATTCACCTGATTTTCTATCCTGGTCCATTAAAGTTTTGGCAAAAATTGAGATCTTCGAAGCCAGTCAGAAGCGGGAAGAAATCATTGATGCTTCCTATGGAGCCATGATTGCTCGAGTTGATCTTGGAGTTGAAATCCCACTTGAACATGTTCCAATTGTCCAAGAGGAAATAAGTCAAGTGTGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

148

Amino Acids

16.75

Weight (kDa)

10.18

Isoelectric Point (pI)

59.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK	PF00224	93 - 146	8.1e-11	Pyruvate kinase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	4 cut(s)	127, 162, 386, 398
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	3 cut(s)	83, 95, 209
AluI	AGCT	3 cut(s)	83, 95, 209
Alw26I	GTCTC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	366
ApeKI	GCWGC	3 cut(s)	25, 119, 143
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	50, 276
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	3 cut(s)	199, 230, 249
AsuII	TTCGAA	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	2 cut(s)	50, 276
BbvI	GCAGC	3 cut(s)	12, 106, 155
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	3 cut(s)	26, 120, 144
BlsI	GCNGC	3 cut(s)	27, 121, 145
Bme1390I	CCNGG	2 cut(s)	220, 274
Bme18I	GGWCC	2 cut(s)	50, 276
BmeT110I	CYCGRG	1 cut(s)	366
BmgT120I	GGNCC	2 cut(s)	50, 276
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	2 cut(s)	220, 274
BmsI	GCATC	2 cut(s)	140, 331
Bpu14I	TTCGAA	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	3 cut(s)	12, 106, 155
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	303, 373
BspACI	CCGC	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	355
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	303, 373
Bst2UI	CCWGG	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	156
BstKTI	GATC	2 cut(s)	306, 376
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	303, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 215, 362
BstNI	CCWGG	1 cut(s)	274
BstNSI	RCATGY	2 cut(s)	154, 404
BstSCI	CCNGG	2 cut(s)	218, 272
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	12, 106, 155
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	50, 276
CviAII	CATG	3 cut(s)	151, 358, 401
CviJI	RGCY	6 cut(s)	83, 95, 119, 209, 314, 356
CviKI_1	RGCY	6 cut(s)	83, 95, 119, 209, 314, 356
DpnI	GATC	2 cut(s)	305, 375
DpnII	GATC	2 cut(s)	303, 373
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	50, 276
Eco88I	CYCGRG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	272
FaeI	CATG	3 cut(s)	154, 361, 404
FaiI	YATR	5 cut(s)	13, 152, 351, 359, 402
FatI	CATG	3 cut(s)	150, 357, 400
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	26, 120, 144
Fsp4HI	GCNGC	3 cut(s)	26, 120, 144
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	26, 120, 144
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	3 cut(s)	154, 361, 404
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	199, 230, 249
Hpy188I	TCNGA	1 cut(s)	321
HpyAV	CCTTC	2 cut(s)	121, 174
HpyCH4V	TGCA	3 cut(s)	28, 62, 122
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 215, 362
Hsp92II	CATG	3 cut(s)	154, 361, 404
Kzo9I	GATC	2 cut(s)	303, 373
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	7 cut(s)	168, 228, 232, 259, 273, 286, 328
Lsp1109I	GCAGC	3 cut(s)	12, 106, 155
LweI	GCATC	2 cut(s)	140, 331
MaeI	CTAG	1 cut(s)	84
MalI	GATC	2 cut(s)	305, 375
MboI	GATC	2 cut(s)	303, 373
MboII	GAAGA	3 cut(s)	216, 298, 341
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	303
MluCI	AATT	3 cut(s)	253, 297, 408
MnlI	CCTC	2 cut(s)	66, 412
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	2 cut(s)	243, 282
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	220, 274
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	3 cut(s)	128, 215, 362
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	303, 373
NlaIII	CATG	3 cut(s)	154, 361, 404
NlaIV	GGNNCC	1 cut(s)	355
NspI	RCATGY	2 cut(s)	154, 404
NspV	TTCGAA	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	366
PciI	ACATGT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	27, 121, 145
PpuMI	RGGWCCY	1 cut(s)	50
PscI	ACATGT	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	50, 276
PspPPI	RGGWCCY	1 cut(s)	50
PspXI	VCTCGAGB	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	243, 282
SatI	GCNGC	3 cut(s)	26, 120, 144
Sau3AI	GATC	2 cut(s)	303, 373
Sau96I	GGNCC	2 cut(s)	50, 276
ScrFI	CCNGG	2 cut(s)	220, 274
SetI	ASST	9 cut(s)	52, 85, 97, 140, 185, 211, 217, 243, 262
SfaNI	GCATC	2 cut(s)	140, 331
SfcI	CTRYAG	1 cut(s)	26
Sfr274I	CTCGAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	309
SinI	GGWCC	2 cut(s)	50, 276
SlaI	CTCGAG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	253, 297, 408
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	218, 272
TaqI	TCGA	2 cut(s)	309, 367
TasI	AATT	3 cut(s)	253, 297, 408
Tru1I	TTAA	2 cut(s)	243, 282
Tru9I	TTAA	2 cut(s)	243, 282
TseI	GCWGC	3 cut(s)	25, 119, 143
VpaK11BI	GGWCC	2 cut(s)	50, 276
XceI	RCATGY	2 cut(s)	154, 404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.