Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

62084482 .. 62097378

Gene Structure 12897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG391900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGATGGCTGGTGTGGACTTACCGGCCGATCTGAAACTGGTTGCTGATGAAAGCTTTGGGACAGTGTGCACTCAGGTCTGCTGTAGGAAAACTGAGGCAACGATTAGGGATTCCGCAGACATTGAATCGACATCACTGTTGACTGCAGATCTATTAAGAGTTTTGGTGAAAATTGAGAGCTTCGAAGCCATTCACAAGCAGGAAAAAATCATTAAAGCTTTCTATGGAGTCATGATTGCTCGGATTGATCTTGGAGTTGAAATCCCACTCAAACAGATTCCAATGGTCCAAGAGAAAATAATTCAAGTGTGTGGGCAGCTAAACAATCAAGTATTTGTAGCTTCTCAACTACTTGAATCAATGATTGAATACCCAACCCCAACACACGTTGAGGAAAGGATATTTCTTCCTTGCCTTGGTGGTGAATTGGACAGTGAGTGTGATGAACCAGTTTCAATGAAACTGTCTACACACAATCAAGAAGAGCTACTAGATTGCAAAACACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

169

Amino Acids

18.81

Weight (kDa)

4.61

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK	PF00224	49 - 131	1.3e-21	Pyruvate kinase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	467
AciI	CCGC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	6 cut(s)	125, 260, 305, 356, 368, 456
AluBI	AGCT	6 cut(s)	54, 180, 218, 319, 341, 487
AluI	AGCT	6 cut(s)	54, 180, 218, 319, 341, 487
Alw21I	GWGCWC	1 cut(s)	71
Alw44I	GTGCAC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	316
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	178, 434
AsuII	TTCGAA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	2 cut(s)	82, 144
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
Bpu14I	TTCGAA	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	42, 449
BseDI	CCNNGG	1 cut(s)	415
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	84, 86
BseNI	ACTGG	2 cut(s)	42, 449
BseSI	GKGCMC	1 cut(s)	71
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	28, 148, 247
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	85, 85
BspHI	TCATGA	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	42, 449
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	3 cut(s)	28, 148, 247
BssT1I	CCWWGG	1 cut(s)	415
Bst4CI	ACNGT	4 cut(s)	64, 138, 434, 465
Bst6I	CTCTTC	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	72, 93
BstKTI	GATC	3 cut(s)	31, 151, 250
BstMBI	GATC	3 cut(s)	28, 148, 247
BstMCI	CGRYCG	1 cut(s)	27
BstSFI	CTRYAG	2 cut(s)	82, 144
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BstZI	CGGCCG	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	26
BtsIMutI	CAGTG	3 cut(s)	69, 134, 439
CciI	TCATGA	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	286
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	9 cut(s)	8, 26, 54, 180, 188, 218, 319, 341, 487
CviKI_1	RGCY	9 cut(s)	8, 26, 54, 180, 188, 218, 319, 341, 487
DdeI	CTNAG	2 cut(s)	72, 93
DpnI	GATC	3 cut(s)	30, 150, 249
DpnII	GATC	3 cut(s)	28, 148, 247
EaeI	YGGCCR	1 cut(s)	24
EagI	CGGCCG	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
EclXI	CGGCCG	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	286
Eco52I	CGGCCG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	1 cut(s)	235
FaiI	YATR	3 cut(s)	225, 233, 508
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	2 cut(s)	52, 216
HinfI	GANTC	5 cut(s)	110, 125, 228, 277, 356
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	178, 434
Hpy166II	GTNNAC	4 cut(s)	16, 69, 141, 468
Hpy188I	TCNGA	2 cut(s)	33, 243
Hpy188III	TCNNGA	2 cut(s)	232, 479
Hpy8I	GTNNAC	4 cut(s)	16, 69, 141, 468
HpyCH4III	ACNGT	4 cut(s)	64, 138, 434, 465
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	69, 146, 498
HpyF3I	CTNAG	2 cut(s)	72, 93
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	28, 148, 247
LguI	GCTCTTC	1 cut(s)	477
LpnPI	CCDG	5 cut(s)	23, 36, 59, 185, 462
Lsp1109I	GCAGC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	387
MalI	GATC	3 cut(s)	30, 150, 249
MboI	GATC	3 cut(s)	28, 148, 247
MboII	GAAGA	2 cut(s)	398, 494
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	3 cut(s)	171, 300, 425
MlyI	GAGTC	1 cut(s)	237
MnlI	CCTC	2 cut(s)	88, 385
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	2 cut(s)	155, 213
MspI	CCGG	1 cut(s)	23
NdeII	GATC	3 cut(s)	28, 148, 247
NlaIII	CATG	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	183
PagI	TCATGA	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	4 cut(s)	110, 125, 277, 356
PkrI	GCNGC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	155, 213
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	3 cut(s)	28, 148, 247
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	8 cut(s)	56, 78, 182, 220, 321, 343, 390, 489
SfcI	CTRYAG	2 cut(s)	82, 144
SfuI	TTCGAA	1 cut(s)	183
SinI	GGWCC	1 cut(s)	286
Sse9I	AATT	3 cut(s)	171, 300, 425
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	4 cut(s)	64, 138, 434, 465
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	128, 183
TasI	AATT	3 cut(s)	171, 300, 425
TfiI	GAWTC	4 cut(s)	110, 125, 277, 356
Tru1I	TTAA	2 cut(s)	155, 213
Tru9I	TTAA	2 cut(s)	155, 213
TscAI	CASTG	3 cut(s)	69, 141, 439
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	63, 459, 473
TspRI	CASTG	3 cut(s)	69, 141, 439
VneI	GTGCAC	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.