Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

17394454 .. 17406653

Gene Structure 12200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG099500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAACAGAGACGAAAATGAAGAGATCTCAGAATGGGTTTATGATGGAGCGGATCCAAGTTATCAGAAGAAGAGGCAAAGAATAGAAAGATCTATTAAAGTTTTGGTGAAAATTGAGAGCTTCGAAGCCATTCAAGAGCAAGAAAAAATCATTGAAGCTTCCTATGGAGTCATGATTGCTCGGGTTGATCTTGGAGTTGAAATCCCACTCAAACAGATTCCAATAGTCCAAGAGAAAATAACTCAAGTGTGTGGGCAGCTAAACAATCAAGTACTTGTAGCTTCTCAACTAACTCGAATCAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

102

Amino Acids

11.78

Weight (kDa)

5.19

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK	PF00224	28 - 97	9.2e-17	Pyruvate kinase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	47, 60
AfaI	GTAC	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	134, 155, 200
AluBI	AGCT	4 cut(s)	120, 158, 259, 281
AluI	AGCT	4 cut(s)	120, 158, 259, 281
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	2 cut(s)	47, 60
Ama87I	CYCGRG	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	3
BglII	AGATCT	2 cut(s)	24, 89
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
BmcAI	AGTACT	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	3
BsmBI	CGTCTC	1 cut(s)	3
BsoBI	CYCGRG	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	123
Bsp143I	GATC	4 cut(s)	24, 52, 89, 187
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	41
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	47, 60
BspT104I	TTCGAA	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	50
BssMI	GATC	4 cut(s)	24, 52, 89, 187
Bst6I	CTCTTC	2 cut(s)	15, 65
BstBI	TTCGAA	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	28
BstKTI	GATC	4 cut(s)	27, 55, 92, 190
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	4 cut(s)	24, 52, 89, 187
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	3 cut(s)	24, 52, 89
BstYI	RGATCY	3 cut(s)	24, 52, 89
CciI	TCATGA	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	5 cut(s)	120, 128, 158, 259, 281
CviKI_1	RGCY	5 cut(s)	120, 128, 158, 259, 281
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	4 cut(s)	26, 54, 91, 189
DpnII	GATC	4 cut(s)	24, 52, 89, 187
Eam1104I	CTCTTC	2 cut(s)	15, 65
EarI	CTCTTC	2 cut(s)	15, 65
Eco88I	CYCGRG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	42, 165, 173
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	3 cut(s)	168, 217, 297
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	31, 66
Hpy188III	TCNNGA	2 cut(s)	134, 172
HpyF3I	CTNAG	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	24, 52, 89, 187
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	268
MalI	GATC	4 cut(s)	26, 54, 91, 189
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	4 cut(s)	24, 52, 89, 187
MboII	GAAGA	3 cut(s)	32, 79, 82
MflI	RGATCY	3 cut(s)	24, 52, 89
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	1 cut(s)	96
NdeII	GATC	4 cut(s)	24, 52, 89, 187
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	123
PagI	TCATGA	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	217, 297
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	54
PsuI	RGATCY	3 cut(s)	24, 52, 89
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	4 cut(s)	24, 52, 89, 187
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	1 cut(s)	177
SetI	ASST	4 cut(s)	122, 160, 261, 283
SfuI	TTCGAA	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	50
TaqI	TCGA	2 cut(s)	123, 295
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	217, 297
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	17, 33
XmnI	GAANNNNTTC	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.