Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

2696911 .. 2703971

Gene Structure 7061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGGAATAGAAGAGAAGAAAGCAGAAGATCTATGAGCTCTGGAAACAAGAGAGAAGAAAGAAAAGACTGGTTGCAAGATTTTAGGAACTGTTTGCAGGCGGATTCTTCAGTTGTCTTGCATTCAGGTCTGCTGTATTTTGATCCATTTCAATTCGATCACTTATCAAGAAAGATCCACACAGAAATAGAGAGATTGGCTGTGATTGTTTGCTTTGCTTTGCACAAAGACATGGAGAGAGAGATAGCTGATATTCACAAAAGGAGATTGTCACCTCATCATCCGAGTACAAGATCTATTAGAGTTTTGGTGAAAATTCCGAGCTTCGAAGCCATTCACAAGCAGGAAAAAATCATTGAAGCTTCCTATGGAGTCATGATTGCTCAGGTTGATCTTGGAGTTGAAATCCCACTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

139

Amino Acids

16.34

Weight (kDa)

9.26

Isoelectric Point (pI)

82.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK	PF00224	80 - 138	7.1e-08	Pyruvate kinase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	2 cut(s)	137, 169
AcsI	RAATTY	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	289
AgsI	TTSAA	3 cut(s)	152, 359, 404
AluBI	AGCT	4 cut(s)	39, 248, 324, 362
AluI	AGCT	4 cut(s)	39, 248, 324, 362
Alw21I	GWGCWC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	137, 169
ApoI	RAATTY	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	264, 322
AsuII	TTCGAA	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	41
BglII	AGATCT	2 cut(s)	29, 293
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	6 cut(s)	29, 142, 157, 174, 293, 391
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	375
BspPI	GGATC	2 cut(s)	137, 169
BspT104I	TTCGAA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	74
BssMI	GATC	6 cut(s)	29, 142, 157, 174, 293, 391
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	6 cut(s)	32, 145, 160, 177, 296, 394
BstMBI	GATC	6 cut(s)	29, 142, 157, 174, 293, 391
BstX2I	RGATCY	3 cut(s)	29, 174, 293
BstYI	RGATCY	3 cut(s)	29, 174, 293
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	232, 376
CviJI	RGCY	6 cut(s)	39, 200, 248, 324, 332, 362
CviKI_1	RGCY	6 cut(s)	39, 200, 248, 324, 332, 362
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	6 cut(s)	31, 144, 159, 176, 295, 393
DpnII	GATC	6 cut(s)	29, 142, 157, 174, 293, 391
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
EciI	GGCGGA	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	2 cut(s)	235, 379
FaiI	YATR	4 cut(s)	35, 233, 369, 377
FatI	CATG	2 cut(s)	231, 375
FokI	GGATG	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	235, 379
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	2 cut(s)	104, 372
HphI	GGTGA	2 cut(s)	264, 322
Hpy188I	TCNGA	2 cut(s)	285, 321
Hpy188III	TCNNGA	3 cut(s)	42, 168, 376
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	76, 97, 121, 223
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	235, 379
Kzo9I	GATC	6 cut(s)	29, 142, 157, 174, 293, 391
LpnPI	CCDG	6 cut(s)	27, 55, 83, 111, 329, 371
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	6 cut(s)	31, 144, 159, 176, 295, 393
MboI	GATC	6 cut(s)	29, 142, 157, 174, 293, 391
MboII	GAAGA	5 cut(s)	24, 29, 39, 68, 99
MflI	RGATCY	3 cut(s)	29, 174, 293
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	152, 315
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	121
NdeII	GATC	6 cut(s)	29, 142, 157, 174, 293, 391
NlaIII	CATG	2 cut(s)	235, 379
NmuCI	GTSAC	1 cut(s)	270
NspV	TTCGAA	1 cut(s)	327
PagI	TCATGA	1 cut(s)	375
PctI	GAATGC	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	29, 174, 293
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	41
Sau3AI	GATC	6 cut(s)	29, 142, 157, 174, 293, 391
SchI	GAGTC	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	7 cut(s)	41, 130, 250, 277, 326, 364, 390
SfuI	TTCGAA	1 cut(s)	327
Sse9I	AATT	2 cut(s)	152, 315
SsiI	CCGC	1 cut(s)	101
SstI	GAGCTC	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	156, 327
TasI	AATT	2 cut(s)	152, 315
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.