Rroxscaffold_2G00134390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003965
Physical Location & Seq
Reverse (-)
71891823 .. 71898128
6306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134390.1

Sequence Viewer

Length: 444 bp
ATGAGGAATAGAAGAGAAGAAAGCGAGAAGATCTATGAGCTGCGGAAACAAGAGAGAAGAAAGAAAAGACTGATTTTAGGAACAGTTTGCAGGCGGATTCTTCAGTTGTCTTGCATTCAGGTCTGCTGTAGGAAAAGCGAGGCAACGATTACAGATTCTGCAGACATTGAATCGACATCTTTGTTGACTGCAGTTGCAAATCAGAATTTCTTTATTGATAGAACCGTATCAATTGAAAGACATGGAGAGAGAGAGATAGCTGATATTCACAAAAGGAGATTGTCACCTCATCATCTCGAGTACAAGTCCAAGCTGCTATCATCACAATTGAAGGGGGTTATCCCCTGGTGGAGATCTTCCCTTCCTGTCCAAGACCATGAGTTGTTAAGAATGAAGGTGTGGTATAACAAATCAGCTTATACTTGGTATCATATTTTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

17.57

Weight (kDa)

9.83

Isoelectric Point (pI)

71.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 43, 94
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 302
AgsI TTSAA 3 cut(s) 170, 236, 331
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 4 cut(s) 40, 260, 313, 416
AluI AGCT 4 cut(s) 40, 260, 313, 416
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 40, 313
ApoI RAATTY 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 296
BbvI GCAGC 2 cut(s) 27, 300
BciT130I CCWGG 1 cut(s) 346
BfmI CTRYAG 3 cut(s) 127, 159, 189
BglII AGATCT 2 cut(s) 30, 353
BisI GCNGC 2 cut(s) 41, 314
BlsI GCNGC 2 cut(s) 42, 315
Bme1390I CCNGG 1 cut(s) 346
BmeT110I CYCGRG 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 27, 300
BsiHKCI CYCGRG 1 cut(s) 296
BsmI GAATGC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 296
Bsp143I GATC 2 cut(s) 30, 353
BspACI CCGC 2 cut(s) 43, 94
BspMAI CTGCAG 2 cut(s) 163, 193
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 2 cut(s) 30, 353
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 85, 226
Bst6I CTCTTC 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 33, 356
BstMBI GATC 2 cut(s) 30, 353
BstNI CCWGG 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 344
BstSFI CTRYAG 3 cut(s) 127, 159, 189
BstV1I GCAGC 2 cut(s) 27, 300
BstX2I RGATCY 2 cut(s) 30, 353
BstYI RGATCY 2 cut(s) 30, 353
Cac8I GCNNGC 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 301
CviAII CATG 2 cut(s) 242, 377
CviJI RGCY 4 cut(s) 40, 260, 313, 416
CviKI_1 RGCY 4 cut(s) 40, 260, 313, 416
CviQI GTAC 1 cut(s) 301
DpnI GATC 2 cut(s) 32, 355
DpnII GATC 2 cut(s) 30, 353
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
EciI GGCGGA 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 344
FaeI CATG 2 cut(s) 245, 380
FaiI YATR 7 cut(s) 36, 243, 378, 405, 420, 432, 442
FatI CATG 2 cut(s) 241, 376
Fnu4HI GCNGC 2 cut(s) 41, 314
Fsp4HI GCNGC 2 cut(s) 41, 314
GluI GCNGC 2 cut(s) 41, 314
Hin1II CATG 2 cut(s) 245, 380
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 3 cut(s) 97, 155, 170
HphI GGTGA 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 3 cut(s) 325, 371, 388
HpyCH4III ACNGT 2 cut(s) 85, 226
HpyCH4V TGCA 6 cut(s) 90, 114, 161, 191, 197, 440
Hsp92II CATG 2 cut(s) 245, 380
Kzo9I GATC 2 cut(s) 30, 353
LpnPI CCDG 5 cut(s) 76, 104, 331, 358, 378
Lsp1109I GCAGC 2 cut(s) 27, 300
MaeIII GTNAC 1 cut(s) 282
MalI GATC 2 cut(s) 32, 355
MboI GATC 2 cut(s) 30, 353
MboII GAAGA 6 cut(s) 24, 29, 40, 69, 92, 348
MfeI CAATTG 2 cut(s) 231, 326
MflI RGATCY 2 cut(s) 30, 353
MluCI AATT 3 cut(s) 205, 231, 326
MnlI CCTC 2 cut(s) 133, 297
MseI TTAA 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 346
MunI CAATTG 2 cut(s) 231, 326
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 346
NdeII GATC 2 cut(s) 30, 353
NlaIII CATG 2 cut(s) 245, 380
NmuCI GTSAC 1 cut(s) 282
PaeR7I CTCGAG 1 cut(s) 296
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 3 cut(s) 97, 155, 170
PkrI GCNGC 2 cut(s) 42, 315
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PstI CTGCAG 2 cut(s) 163, 193
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 30, 353
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 41, 314
Sau3AI GATC 2 cut(s) 30, 353
ScrFI CCNGG 1 cut(s) 346
SetI ASST 7 cut(s) 42, 123, 262, 289, 315, 399, 418
SfcI CTRYAG 3 cut(s) 127, 159, 189
Sfr274I CTCGAG 1 cut(s) 296
SlaI CTCGAG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 3 cut(s) 205, 231, 326
SsiI CCGC 2 cut(s) 43, 94
StyD4I CCNGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 85, 226
TaqI TCGA 2 cut(s) 173, 297
TasI AATT 3 cut(s) 205, 231, 326
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 3 cut(s) 97, 155, 170
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TseFI GTSAC 1 cut(s) 282
TseI GCWGC 2 cut(s) 40, 313
Tsp45I GTSAC 1 cut(s) 282
TspDTI ATGAA 1 cut(s) 407
XapI RAATTY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.