Rh6AG277600

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003965
Physical Location & Seq
Forward (+)
47162666 .. 47162992
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG277600.1

Sequence Viewer

Length: 327 bp
ATGGCAAAGATAGAGAGTATTGACTCTCTAAAGAACTTGGAAGAGATCATCCTTGCATCAGATGGAGTAATGGTAGCAAGAGGTGACCTAGGTGCTCAGATACCATTGGAACAGGTCCCATCATCCCAGCAAAAGATTGTTCAAGTATGTCGGCAGCTAAATAAGCCAGTCATTGTTGCTTCTCAACTACTCGAATCTATGATCGAGTATCCTACACCCACTAGAGCTGAAGTGGCTGATGCTTCTGAAGCCGTGAGGCAGCGAGCTGATGCTCTGATGCTTTCTGGTGAGTCAACTATGGGCCAGTTCTCAAAAGTGTCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

108

Amino Acids

11.66

Weight (kDa)

4.73

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 1 - 108 2.7e-39 Pyruvate kinase, barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 249, 267
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 3 cut(s) 157, 227, 266
AluI AGCT 3 cut(s) 157, 227, 266
Alw21I GWGCWC 1 cut(s) 97
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 154, 259
AspA2I CCTAGG 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 115, 301
AsuHPI GGTGA 2 cut(s) 95, 299
AvaII GGWCC 1 cut(s) 115
AvrII CCTAGG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 166, 271
BccI CCATC 2 cut(s) 56, 127
BceAI ACGGC 1 cut(s) 236
BciVI GTATCC 1 cut(s) 219
BfaI CTAG 2 cut(s) 89, 222
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 2 cut(s) 155, 260
BlnI CCTAGG 1 cut(s) 88
BlsI GCNGC 2 cut(s) 156, 261
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 115, 301
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 4 cut(s) 65, 229, 259, 267
BsaJI CCNNGG 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bse1I ACTGG 2 cut(s) 167, 304
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 48, 122
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 167, 304
BseXI GCAGC 2 cut(s) 166, 271
BseYI CCCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 97
BslFI GGGAC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 2 cut(s) 45, 201
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 117
BsrI ACTGG 2 cut(s) 167, 304
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 45, 201
BssT1I CCWWGG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 83
BstF5I GGATG 2 cut(s) 48, 122
BstKTI GATC 2 cut(s) 48, 204
BstMBI GATC 2 cut(s) 45, 201
BstMWI GCNNNNNNNGC 3 cut(s) 163, 233, 248
BstPI GGTNACC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 166, 271
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 48, 122
Cac8I GCNNGC 1 cut(s) 264
Cfr13I GGNCC 2 cut(s) 115, 301
CviJI RGCY 7 cut(s) 157, 166, 227, 236, 251, 266, 303
CviKI_1 RGCY 7 cut(s) 157, 166, 227, 236, 251, 266, 303
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 47, 203
DpnII GATC 2 cut(s) 45, 201
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 2 cut(s) 249, 267
Eco91I GGTNACC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 115
EcoO65I GGTNACC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaiI YATR 3 cut(s) 148, 200, 299
FaqI GGGAC 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 155, 260
FokI GGATG 2 cut(s) 35, 109
Fsp4HI GCNGC 2 cut(s) 155, 260
FspBI CTAG 2 cut(s) 89, 222
GluI GCNGC 2 cut(s) 155, 260
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 3 cut(s) 23, 194, 290
HphI GGTGA 2 cut(s) 95, 299
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 4 cut(s) 61, 99, 247, 276
Hpy8I GTNNAC 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 233, 248
HpyF3I CTNAG 1 cut(s) 96
Kzo9I GATC 2 cut(s) 45, 201
LpnPI CCDG 5 cut(s) 98, 140, 180, 270, 317
Lsp1109I GCAGC 2 cut(s) 166, 271
LweI GCATC 4 cut(s) 65, 229, 259, 267
MaeI CTAG 2 cut(s) 89, 222
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 47, 203
MboI GATC 2 cut(s) 45, 201
MboII GAAGA 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 97
MlyI GAGTC 2 cut(s) 17, 299
MnlI CCTC 2 cut(s) 74, 249
MwoI GCNNNNNNNGC 3 cut(s) 163, 233, 248
NdeII GATC 2 cut(s) 45, 201
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 156, 261
PleI GAGTC 2 cut(s) 17, 298
PpsI GAGTC 2 cut(s) 17, 298
PpuMI RGGWCCY 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 115
PspEI GGTNACC 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 115, 301
PspPPI RGGWCCY 1 cut(s) 115
SatI GCNGC 2 cut(s) 155, 260
Sau3AI GATC 2 cut(s) 45, 201
Sau96I GGNCC 2 cut(s) 115, 301
SchI GAGTC 2 cut(s) 17, 299
SduI GDGCHC 1 cut(s) 97
SetI ASST 7 cut(s) 85, 90, 94, 117, 159, 229, 268
SfaNI GCATC 4 cut(s) 65, 229, 259, 267
SinI GGWCC 1 cut(s) 115
SspMI CTAG 2 cut(s) 89, 222
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 2 cut(s) 192, 204
TfiI GAWTC 1 cut(s) 194
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 154, 259
Tsp45I GTSAC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 115
XmaJI CCTAGG 1 cut(s) 88
XspI CTAG 2 cut(s) 89, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.