Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

4225710 .. 4238632

Gene Structure 12923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG054300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGTATGTTTGTGATGGTGTCACTCACCAGCTGCAGTGGAAAACTGTCAACAATTCGAAAAGCATAATTCGCTCTTTGACAGAAGTTATTCGTAAAGAGGAAAGGAGGAGATCTATCGGGTCTGCAAAGAGGGATAGAAGAGAGGAAAGGAGAAGATCTATTGGGTCTGGGATCGAAAAAAGCGAAAAAAGAGAGTGGAAAGAAAAAACCGGTTGCAAAGATCTATTAAGAGTTTTGGTGAAAATTGAGAGCTTCGAAGCCATTCACAAGCAGGAAAAAATCATTAAAGCTTTCTATGGAGTCATGATTGCTCGGATTGATCTTGGAGTTGAAATCCCACTCAAACAGATTCCAATGGTCCAAGAGAAAATAATTCAAGTGTGTGGGCAGCTAAACAATCAAGTAGTTGTAGCTTCTCAACTACTTGAATCAATGATTGAATACCCAACCCCAACACACGTTGAGGAAAGGATATTTCTTCCTTGCCTTGGTGGTGAATTGGACAGTGAGTGTGATGAACCAGTTTCAATGAAACTGTCTACACACAATCAAGAAGAGCTACTAGATTGCAAAACACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

194

Amino Acids

22.41

Weight (kDa)

7.6

Isoelectric Point (pI)

69.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK	PF00224	68 - 156	3.4e-22	Pyruvate kinase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	542
AclWI	GGATC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	460
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	5 cut(s)	335, 380, 431, 443, 531
AluBI	AGCT	6 cut(s)	34, 255, 293, 394, 416, 562
AluI	AGCT	6 cut(s)	34, 255, 293, 394, 416, 562
AlwI	GGATC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	34, 391
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	2 cut(s)	90, 264
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	20, 253, 509
AsuII	TTCGAA	2 cut(s)	59, 258
AvaII	GGWCC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	21, 403
BccI	CCATC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	35
BglII	AGATCT	3 cut(s)	113, 158, 223
BisI	GCNGC	2 cut(s)	35, 392
BlsI	GCNGC	2 cut(s)	36, 393
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
Bpu14I	TTCGAA	2 cut(s)	59, 258
BsaJI	CCNNGG	1 cut(s)	490
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	21, 403
BshTI	ACCGGT	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	491
Bsp119I	TTCGAA	2 cut(s)	59, 258
Bsp143I	GATC	5 cut(s)	113, 158, 174, 223, 322
BspHI	TCATGA	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	39
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	552
BspT104I	TTCGAA	2 cut(s)	59, 258
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	524
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	5 cut(s)	113, 158, 174, 223, 322
BssT1I	CCWWGG	1 cut(s)	490
Bst4CI	ACNGT	3 cut(s)	49, 509, 540
Bst6I	CTCTTC	2 cut(s)	136, 552
BstBI	TTCGAA	2 cut(s)	59, 258
BstKTI	GATC	5 cut(s)	116, 161, 177, 226, 325
BstMBI	GATC	5 cut(s)	113, 158, 174, 223, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	21, 403
BstX2I	RGATCY	3 cut(s)	113, 158, 223
BstYI	RGATCY	3 cut(s)	113, 158, 223
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 514
CciI	TCATGA	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	361
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	7 cut(s)	34, 255, 263, 293, 394, 416, 562
CviKI_1	RGCY	7 cut(s)	34, 255, 263, 293, 394, 416, 562
DpnI	GATC	5 cut(s)	115, 160, 176, 225, 324
DpnII	GATC	5 cut(s)	113, 158, 174, 223, 322
Eam1104I	CTCTTC	2 cut(s)	136, 552
EarI	CTCTTC	2 cut(s)	136, 552
Eco130I	CCWWGG	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	1 cut(s)	310
FaiI	YATR	5 cut(s)	9, 68, 300, 308, 583
FatI	CATG	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	542
Fnu4HI	GCNGC	2 cut(s)	35, 392
Fsp4HI	GCNGC	2 cut(s)	35, 392
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	2 cut(s)	35, 392
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	3 cut(s)	303, 352, 431
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	3 cut(s)	20, 253, 509
Hpy166II	GTNNAC	2 cut(s)	52, 543
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	2 cut(s)	307, 554
Hpy8I	GTNNAC	2 cut(s)	52, 543
HpyCH4III	ACNGT	3 cut(s)	49, 509, 540
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	37, 128, 219, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	113, 158, 174, 223, 322
LguI	GCTCTTC	1 cut(s)	552
LpnPI	CCDG	5 cut(s)	44, 156, 226, 260, 537
Lsp1109I	GCAGC	2 cut(s)	21, 403
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	5 cut(s)	115, 160, 176, 225, 324
MboI	GATC	5 cut(s)	113, 158, 174, 223, 322
MboII	GAAGA	4 cut(s)	153, 168, 473, 569
MflI	RGATCY	3 cut(s)	113, 158, 223
MluCI	AATT	5 cut(s)	55, 69, 246, 375, 500
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	94, 102, 126, 139, 460
MroXI	GAANNNNTTC	2 cut(s)	90, 264
MseI	TTAA	2 cut(s)	230, 288
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	5 cut(s)	113, 158, 174, 223, 322
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	22
NspV	TTCGAA	2 cut(s)	59, 258
PagI	TCATGA	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	2 cut(s)	90, 264
PfeI	GAWTC	2 cut(s)	352, 431
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	36, 393
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	39
PsuI	RGATCY	3 cut(s)	113, 158, 223
PvuII	CAGCTG	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	2 cut(s)	230, 288
SatI	GCNGC	2 cut(s)	35, 392
Sau3AI	GATC	5 cut(s)	113, 158, 174, 223, 322
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	312
SetI	ASST	7 cut(s)	36, 257, 295, 396, 418, 465, 564
SfcI	CTRYAG	1 cut(s)	35
SfuI	TTCGAA	2 cut(s)	59, 258
SinI	GGWCC	1 cut(s)	361
Sse9I	AATT	5 cut(s)	55, 69, 246, 375, 500
SspMI	CTAG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	3 cut(s)	49, 509, 540
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	59, 177, 258
TasI	AATT	5 cut(s)	55, 69, 246, 375, 500
TfiI	GAWTC	2 cut(s)	352, 431
Tru1I	TTAA	2 cut(s)	230, 288
Tru9I	TTAA	2 cut(s)	230, 288
TscAI	CASTG	2 cut(s)	44, 514
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	2 cut(s)	34, 391
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	534, 548
TspRI	CASTG	2 cut(s)	44, 514
VpaK11BI	GGWCC	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	542
XmnI	GAANNNNTTC	2 cut(s)	90, 264
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.