Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

63879362 .. 63880002

Gene Structure 641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG450100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTTGAAGCAGTTGAAAAAATGGGTATGGCAATATCTAGGATGGTGAAGATGCTGTTTGCAAGGAAAGAAAAATATAATATCAACGTGTTTGTTTGCAGGTCCATTAAAGTTTTGGCGAAAATTGAGATCTTCGAAGCCATTCAGAAGCAGGAAGAAATCATTGAAGCTTCCTATGGAGCCATGATTGCTCGGGTTGATCTTGGAGTTGAAATCCCACTCGAACATGTTCCAATTGTCCAAGAGGAAATAAGTCAAGTGTGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

89

Amino Acids

10.08

Weight (kDa)

5.41

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK	PF00224	34 - 88	5.6e-13	Pyruvate kinase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AflIII	ACRYGT	2 cut(s)	87, 226
AgsI	TTSAA	4 cut(s)	8, 17, 167, 212
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	192
Asp700I	GAANNNNTTC	2 cut(s)	141, 228
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	102
BccI	CCATC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	135
BseGI	GGATG	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	192
BsoBI	CYCGRG	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	129, 199
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	135
BssMI	GATC	2 cut(s)	129, 199
BstBI	TTCGAA	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	2 cut(s)	132, 202
BstMBI	GATC	2 cut(s)	129, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	102
CviAII	CATG	2 cut(s)	184, 227
CviJI	RGCY	3 cut(s)	140, 170, 182
CviKI_1	RGCY	3 cut(s)	140, 170, 182
DpnI	GATC	2 cut(s)	131, 201
DpnII	GATC	2 cut(s)	129, 199
Eco47I	GGWCC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	192
FaeI	CATG	2 cut(s)	187, 230
FaiI	YATR	5 cut(s)	29, 78, 177, 185, 228
FatI	CATG	2 cut(s)	183, 226
FokI	GGATG	1 cut(s)	55
FspBI	CTAG	1 cut(s)	39
Hin1II	CATG	2 cut(s)	187, 230
HindIII	AAGCTT	1 cut(s)	168
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	62, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	187, 230
Kzo9I	GATC	2 cut(s)	129, 199
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	2 cut(s)	85, 137
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	87
MalI	GATC	2 cut(s)	131, 201
MboI	GATC	2 cut(s)	129, 199
MboII	GAAGA	3 cut(s)	61, 124, 167
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	2 cut(s)	123, 234
MnlI	CCTC	1 cut(s)	238
MroXI	GAANNNNTTC	2 cut(s)	141, 228
MseI	TTAA	1 cut(s)	108
MunI	CAATTG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	129, 199
NlaIII	CATG	2 cut(s)	187, 230
NlaIV	GGNNCC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	135
PciI	ACATGT	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	141, 228
PscI	ACATGT	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	129, 199
Sau96I	GGNCC	1 cut(s)	102
SetI	ASST	3 cut(s)	90, 104, 172
SfaNI	GCATC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	2 cut(s)	123, 234
SspMI	CTAG	1 cut(s)	39
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	135, 222
TasI	AATT	2 cut(s)	123, 234
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmnI	GAANNNNTTC	2 cut(s)	141, 228
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.