Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003965

Physical Location & Seq

Genomic Coordinates Reverse (-)

1889091 .. 1890134

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAGATCTATTAGAGTTTTGGTGAAAATTCAGAGCTTCGAAGCCATTCACAAGCAGGAAAAAATCATTGAAGCTTCCTATGGAGTCATGATTGCTCAGCTAAACAATCAAGTGTTTGTAGCTTCTCAACTACTTGAATCAATGATTGAATACCCAATCCCAACACACGTTGAGGAAAGGATATTTTTTCCTTGCCTTGGTGGTGAATTGGACACTGAGTGTAATGAACCAGTTTCAATGAAACCATGTGCTTCCCCATCATGGACTACACACAATCAAGAGGAGCTACTAGATTGCAAAACACTATCAGAGGTTTTAAAGAGCTTAGAAAAGAAGGTGCCTAACTTGAAAATTTTCACCTATGAACAATTGGATCAGTTGAAAAGAGCTGCCATCTTCCCTGAATGTGAAGTGAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med27

Protein Analysis

141

Amino Acids

16.1

Weight (kDa)

5.26

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003965)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343391 RchiOBHm_Chr2g0162991 RchiOBHm_Chr4g0397821 RchiOBHm_Chr7g0183001 RchiOBHm_Chr7g0186671
rosa_laevigata	RLG00000010466 RLG00000034508
rosa_multiflora	Rmu_sc0000596.1_g000045 Rmu_sc0001918.1_g000016 Rmu_sc0005356.1_g000015 Rmu_sc0014902.1_g000005
rosa_roxburghii	Rroxscaffold_2G00134390 Rroxscaffold_3G00231710 Rroxscaffold_3G00231720 Rroxscaffold_4G00280010 Rroxscaffold_4G00327160 Rroxscaffold_4G00327170 Rroxscaffold_7G00188990 Rroxscaffold_7G00189000
rosa_rugosa	Rorug02G0268600 Rorug05G0357900
rosa_samantha	Rh1AG391900 Rh1AG412600 Rh1BG099500 Rh1CG169600 Rh3AG273100 Rh3AG296400 Rh3CG306500 Rh4DG384100 Rh6AG277600 Rh6CG216000 Rh7CG481400 Rh7DG054300 Rh7DG450100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	27, 351
AdeI	CACNNNGTG	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	197, 261
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	6 cut(s)	71, 137, 149, 237, 349, 382
AluBI	AGCT	7 cut(s)	36, 74, 100, 122, 286, 324, 389
AluI	AGCT	7 cut(s)	36, 74, 100, 122, 286, 324, 389
AlwI	GGATC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	2 cut(s)	27, 351
Asp700I	GAANNNNTTC	2 cut(s)	45, 353
AsuHPI	GGTGA	3 cut(s)	34, 215, 349
AsuII	TTCGAA	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	2 cut(s)	265, 401
BfaI	CTAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	1 cut(s)	390
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	391
BmiI	GGNNCC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 261
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	197, 261
BseMII	CTCAG	2 cut(s)	110, 207
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	376
BshNI	GGYRCC	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	197, 261
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	5, 373
Bsp1720I	GCTNAGC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	109, 208
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	381
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	5, 373
BssT1I	CCWWGG	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	96, 216, 325
BstKTI	GATC	2 cut(s)	8, 376
BstMBI	GATC	2 cut(s)	5, 373
BstV1I	GCAGC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	213
CciI	TCATGA	1 cut(s)	87
CviAII	CATG	3 cut(s)	88, 246, 261
CviJI	RGCY	8 cut(s)	36, 44, 74, 100, 122, 286, 324, 389
CviKI_1	RGCY	8 cut(s)	36, 44, 74, 100, 122, 286, 324, 389
DdeI	CTNAG	3 cut(s)	96, 216, 325
DpnI	GATC	2 cut(s)	7, 375
DpnII	GATC	2 cut(s)	5, 373
DraI	TTTAAA	1 cut(s)	318
DraIII	CACNNNGTG	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	3 cut(s)	91, 249, 264
FaiI	YATR	5 cut(s)	81, 89, 247, 262, 363
FatI	CATG	3 cut(s)	87, 245, 260
Fnu4HI	GCNGC	1 cut(s)	390
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	1 cut(s)	390
Hin1II	CATG	3 cut(s)	91, 249, 264
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	2 cut(s)	84, 137
HphI	GGTGA	3 cut(s)	34, 215, 349
Hpy188I	TCNGA	2 cut(s)	33, 310
Hpy188III	TCNNGA	2 cut(s)	88, 278
HpyAV	CCTTC	1 cut(s)	328
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	297
HpyF3I	CTNAG	3 cut(s)	96, 216, 325
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	91, 249, 264
Kzo9I	GATC	2 cut(s)	5, 373
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	3 cut(s)	41, 243, 414
Lsp1109I	GCAGC	1 cut(s)	376
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	168
MalI	GATC	2 cut(s)	7, 375
MboI	GATC	2 cut(s)	5, 373
MboII	GAAGA	1 cut(s)	388
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	4 cut(s)	27, 206, 351, 368
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	3 cut(s)	166, 274, 304
MroXI	GAANNNNTTC	2 cut(s)	45, 353
MseI	TTAA	1 cut(s)	317
MunI	CAATTG	1 cut(s)	368
NdeII	GATC	2 cut(s)	5, 373
NlaIII	CATG	3 cut(s)	91, 249, 264
NlaIV	GGNNCC	1 cut(s)	339
NspV	TTCGAA	1 cut(s)	39
PagI	TCATGA	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	45, 353
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	2 cut(s)	5, 373
SchI	GAGTC	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	39
Sse9I	AATT	4 cut(s)	27, 206, 351, 368
SspMI	CTAG	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	196
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	39
TasI	AATT	4 cut(s)	27, 206, 351, 368
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	3 cut(s)	240, 254, 378
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	27, 351
XmnI	GAANNNNTTC	2 cut(s)	45, 353
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.