Rroxscaffold_7G00188990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003965
Physical Location & Seq
Reverse (-)
28768073 .. 28777646
9574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188990.1

Sequence Viewer

Length: 504 bp
ATGGAGAGAGAGATAGCTGATATTCACAAAAGGAGATTGTCACCTTATCATCGAGTACAAGGCAGTTTCCATATCGGAAATCCAACGATGGTACTCAAGTCCTTCGAGTCCAAGATGTCAAACTCGGTCGAGTTGGATCAGCCATCTACACAAAACAAAAGAGAAGATATAAATTACGCAGTCATAAAGACATCCACAGTTCGTATAAGTTCAGATTCAATGAGTAAAATAGAGGCTGAACTTGAAGCTGAATTTCAAAGGTTGGGGCTAAACAGGAATACTTCTACTTTGGAGAGAAGATTAACTGATCTTGATGAGTCCAAGCTGCTATCATCACGATTGAAGGGGTTATCCCCTGGTGGAGATCTTCCCTTCCTATCTATTAGAGTTTTGGTGAAAATTCCGAGCTTCGAAGCCATTCACAAGCAGGAAAAAATCATTGAAGCTTCCTATGGAGTCATGATTGCTCAGGTTGATCTTGGAGTTGAAATCCCACTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.87

Weight (kDa)

7.97

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 127 - 166 3e-06 Pyruvate kinase, barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 144
AcsI RAATTY 2 cut(s) 251, 399
AfaI GTAC 2 cut(s) 57, 93
AgsI TTSAA 6 cut(s) 219, 245, 257, 343, 443, 488
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 5 cut(s) 17, 248, 325, 408, 446
AluI AGCT 5 cut(s) 17, 248, 325, 408, 446
AlwI GGATC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 2 cut(s) 251, 399
Asp700I GAANNNNTTC 1 cut(s) 417
AsuHPI GGTGA 2 cut(s) 33, 406
AsuII TTCGAA 1 cut(s) 411
BaeI ACNNNNGTAYC 2 cut(s) 83, 116
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 82, 151
BciT130I CCWGG 1 cut(s) 357
BglII AGATCT 1 cut(s) 364
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 482
BseXI GCAGC 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 411
Bsp143I GATC 4 cut(s) 136, 307, 364, 475
BspCNI CTCAG 1 cut(s) 481
BspHI TCATGA 1 cut(s) 459
BspPI GGATC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 4 cut(s) 136, 307, 364, 475
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 411
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 1 cut(s) 191
BstKTI GATC 4 cut(s) 139, 310, 367, 478
BstMBI GATC 4 cut(s) 136, 307, 364, 475
BstMCI CGRYCG 1 cut(s) 129
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BtsCI GGATG 1 cut(s) 191
CciI TCATGA 1 cut(s) 459
Csp6I GTAC 2 cut(s) 56, 92
CviAII CATG 1 cut(s) 460
CviJI RGCY 9 cut(s) 17, 142, 236, 248, 268, 325, 408, 416, 446
CviKI_1 RGCY 9 cut(s) 17, 142, 236, 248, 268, 325, 408, 416, 446
CviQI GTAC 2 cut(s) 56, 92
DdeI CTNAG 1 cut(s) 468
DpnI GATC 4 cut(s) 138, 309, 366, 477
DpnII GATC 4 cut(s) 136, 307, 364, 475
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 463
FaiI YATR 6 cut(s) 72, 170, 185, 206, 453, 461
FatI CATG 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 326
Hin1II CATG 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 4 cut(s) 107, 215, 317, 456
HphI GGTGA 2 cut(s) 33, 406
Hpy188I TCNGA 3 cut(s) 77, 214, 405
Hpy188III TCNNGA 3 cut(s) 311, 336, 460
HpyAV CCTTC 3 cut(s) 112, 337, 382
HpyCH4III ACNGT 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 1 cut(s) 463
Kzo9I GATC 4 cut(s) 136, 307, 364, 475
LpnPI CCDG 5 cut(s) 259, 342, 369, 413, 455
Lsp1109I GCAGC 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 39
MalI GATC 4 cut(s) 138, 309, 366, 477
MboI GATC 4 cut(s) 136, 307, 364, 475
MboII GAAGA 3 cut(s) 176, 309, 359
MflI RGATCY 1 cut(s) 364
MluCI AATT 3 cut(s) 172, 251, 399
MlyI GAGTC 3 cut(s) 116, 326, 465
MmeI TCCRAC 2 cut(s) 107, 114
MnlI CCTC 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
NdeII GATC 4 cut(s) 136, 307, 364, 475
NlaIII CATG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 39
NspV TTCGAA 1 cut(s) 411
PagI TCATGA 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 3 cut(s) 115, 325, 464
PpsI GAGTC 3 cut(s) 115, 325, 464
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 2 cut(s) 57, 93
RsaNI GTAC 2 cut(s) 56, 92
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 4 cut(s) 136, 307, 364, 475
SchI GAGTC 3 cut(s) 116, 326, 465
ScrFI CCNGG 1 cut(s) 357
SetI ASST 8 cut(s) 19, 46, 250, 263, 327, 410, 448, 474
SfuI TTCGAA 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 3 cut(s) 172, 251, 399
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 52, 105, 129, 411
TaqII GACCGA 1 cut(s) 115
TasI AATT 3 cut(s) 172, 251, 399
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 39
XapI RAATTY 2 cut(s) 251, 399
XmnI GAANNNNTTC 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.