Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Reverse (-)

43723417 .. 43725398

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTACATGGGGGCTAATGGGTTTGTTGAAGCACTTCTACGCTTTCTTAACTCAGCTGTGCGTGAAGCAAATGTTTTGGCTCAAGAAAGTGGAGCTATGGCTCTATTCAATCTTGCTGTGAATAATAACAGAAATAAGGAGACAATGCTTGCGTCAGGGGTAATTTCGTTGCTGGAGGAAATGATCTCCTATCCCAGTTCTCATGGACCTGCGGCAGCCCTTTATCTGAATCTCTCCTGCCTTGAAGAAGCCAAGCCTTTAATTGGCGCAAGCCCTGCTGTCCCCCAACTCCTTCAAGCTAATGCTGAAACTCAATACAAGCTTGATGCCCTCCATGCCCTATACAACCTTTCTAGCATCCCCTCAAACATTCCAAATCTTCTTTCAGCCAGTATCATCAGTGGTTTGCAATCCCTTCTTGCAGACTCCGGTGAACATTCATGGACAGAAAAATGTATAGCTGTTTTGATAAATTTGGCTTCAAGTAATTCTGCAAAAGATGAAATGATTTCAAATACGAAGCTTATCAGTGCACTAGCAGCACTTCTGGAGGCTGAACAACCCATTGAGCAGGAGCAAGCTGTCTCATGTCTCTTTATGTTGTGTAATGGGAATGAGAAATGCAGTCAGATGGTCCTGCGGGAAGGGGTAATTCCTGCATTGGTGTCGATGTCCGTTAATAGAACATCAAGAGGAAAAGAGAAAGCTCAGAAGCTGTTAATGCTGTTTCGTGAGCCTAGACAAAAGAGACCAATCACCTCCGGAGGAGAAGGTACAACTCTGCAAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

264

Amino Acids

28.39

Weight (kDa)

5.73

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	90 - 235	3.8e-10	ARMC5
ARM_PUB	PF25598	109 - 247	6.6e-11	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AccIII	TCCGGA	1 cut(s)	761
AciI	CCGC	2 cut(s)	212, 640
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	2 cut(s)	5, 775
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	6 cut(s)	29, 109, 245, 296, 483, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	367, 399
AluBI	AGCT	9 cut(s)	56, 95, 299, 322, 461, 523, 581, 707, 715
AluI	AGCT	9 cut(s)	56, 95, 299, 322, 461, 523, 581, 707, 715
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	4 cut(s)	134, 589, 596, 742
Alw44I	GTGCAC	1 cut(s)	531
AlwNI	CAGNNNCTG	1 cut(s)	715
Aor13HI	TCCGGA	1 cut(s)	761
ApaLI	GTGCAC	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	215, 539
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	206, 634
AsuHPI	GGTGA	2 cut(s)	443, 748
AvaII	GGWCC	2 cut(s)	206, 634
BaeGI	GKGCMC	1 cut(s)	535
BarI	GAAGNNNNNNTAC	2 cut(s)	21, 53
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	227, 551
BccI	CCATC	1 cut(s)	625
BcgI	CGANNNNNNTGC	2 cut(s)	648, 682
BcoDI	GTCTC	4 cut(s)	134, 589, 596, 742
BfaI	CTAG	3 cut(s)	354, 536, 738
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	3 cut(s)	213, 216, 540
BlsI	GCNGC	3 cut(s)	214, 217, 541
Bme18I	GGWCC	2 cut(s)	206, 634
BmgT120I	GGNCC	2 cut(s)	206, 634
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	316, 366
BmuI	ACTGGG	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	194, 569
BpuEI	CTTGAG	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	742
BsaWI	WCCGGW	2 cut(s)	428, 761
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	195, 390
BseAI	TCCGGA	1 cut(s)	761
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	2 cut(s)	66, 722
BseNI	ACTGG	2 cut(s)	195, 390
BseRI	GAGGAG	1 cut(s)	780
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	2 cut(s)	227, 551
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	2 cut(s)	429, 762
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	4 cut(s)	134, 589, 596, 742
BsmFI	GGGAC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	742
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp13I	TCCGGA	1 cut(s)	761
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	2 cut(s)	212, 640
BspCNI	CTCAG	2 cut(s)	65, 721
BspEI	TCCGGA	1 cut(s)	761
BspMI	ACCTGC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	742
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	195, 390
BssMI	GATC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	150, 271, 579
BstDEI	CTNAG	2 cut(s)	52, 708
BstF5I	GGATG	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	4 cut(s)	134, 589, 596, 742
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 335, 539, 721
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	2 cut(s)	227, 551
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	406, 535
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	150, 271, 579
CaiI	CAGNNNCTG	1 cut(s)	715
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	206, 634
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	4, 774
CviAII	CATG	5 cut(s)	7, 203, 335, 441, 588
CviQI	GTAC	2 cut(s)	4, 774
DdeI	CTNAG	2 cut(s)	52, 708
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	742
Eco47I	GGWCC	2 cut(s)	206, 634
FaeI	CATG	5 cut(s)	10, 206, 338, 444, 591
FaiI	YATR	9 cut(s)	8, 98, 204, 336, 343, 442, 458, 589, 599
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	5 cut(s)	6, 202, 334, 440, 587
FauI	CCCGC	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	213, 216, 540
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	213, 216, 540
FspBI	CTAG	3 cut(s)	354, 536, 738
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	213, 216, 540
GsuI	CTGGAG	2 cut(s)	194, 569
HapII	CCGG	2 cut(s)	429, 762
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	5 cut(s)	10, 206, 338, 444, 591
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	2 cut(s)	320, 521
HinfI	GANTC	2 cut(s)	229, 425
HpaII	CCGG	2 cut(s)	429, 762
HphI	GGTGA	2 cut(s)	443, 748
Hpy166II	GTNNAC	2 cut(s)	434, 533
Hpy188I	TCNGA	3 cut(s)	228, 630, 711
Hpy188III	TCNNGA	5 cut(s)	83, 548, 690, 731, 762
Hpy8I	GTNNAC	2 cut(s)	434, 533
HpyAV	CCTTC	4 cut(s)	302, 425, 638, 764
HpyCH4V	TGCA	7 cut(s)	409, 422, 494, 533, 624, 659, 784
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 335, 539, 721
HpyF3I	CTNAG	2 cut(s)	52, 708
Hsp92II	CATG	5 cut(s)	10, 206, 338, 444, 591
HspAI	GCGC	1 cut(s)	267
Kpn2I	TCCGGA	1 cut(s)	761
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	2 cut(s)	92, 574
Lsp1109I	GCAGC	2 cut(s)	227, 551
LweI	GCATC	2 cut(s)	316, 366
MaeI	CTAG	3 cut(s)	354, 536, 738
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	2 cut(s)	257, 371
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	5 cut(s)	162, 261, 472, 487, 651
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	7 cut(s)	169, 341, 373, 544, 686, 758, 769
MroI	TCCGGA	1 cut(s)	761
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	4 cut(s)	48, 260, 678, 719
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	2 cut(s)	429, 762
MwoI	GCNNNNNNNGC	4 cut(s)	275, 335, 539, 721
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	5 cut(s)	10, 206, 338, 444, 591
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	214, 217, 541
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PspPI	GGNCC	2 cut(s)	206, 634
PstNI	CAGNNNCTG	1 cut(s)	715
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	2 cut(s)	5, 775
RsaNI	GTAC	2 cut(s)	4, 774
SaqAI	TTAA	4 cut(s)	48, 260, 678, 719
SatI	GCNGC	3 cut(s)	213, 216, 540
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	2 cut(s)	206, 634
SchI	GAGTC	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	2 cut(s)	316, 366
SinI	GGWCC	2 cut(s)	206, 634
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	5 cut(s)	162, 261, 472, 487, 651
SsiI	CCGC	2 cut(s)	212, 640
SspMI	CTAG	3 cut(s)	354, 536, 738
TaqI	TCGA	1 cut(s)	668
TasI	AATT	5 cut(s)	162, 261, 472, 487, 651
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	4 cut(s)	48, 260, 678, 719
Tru9I	TTAA	4 cut(s)	48, 260, 678, 719
TscAI	CASTG	2 cut(s)	406, 535
TseI	GCWGC	2 cut(s)	215, 539
TspDTI	ATGAA	2 cut(s)	429, 516
TspGWI	ACGGA	1 cut(s)	664
TspRI	CASTG	2 cut(s)	406, 535
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	2 cut(s)	206, 634
XapI	RAATTY	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	3 cut(s)	354, 536, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.