Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001789

Physical Location & Seq

Genomic Coordinates Reverse (-)

41535264 .. 41536790

Gene Structure 1527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGGGCAAACGTAAACGTTGTGTTGGTTTCTCTTCTTATTTTTTTAGCTATTAGTTCTTGTAATGGAGGTCAGCTGAGTCCGGTGTTCTACCGCAAGAGTTGCCCGCAACTTGGAAGAATAGTGAGGAACATTACCTGGAGCAAAGTTGCAGCAAACCCTGCCTTCGCAGCTAAGCTTCTACGGCTGCATTACCATGATTGCTTTGTCCAGGGATGTGATGCATCGCTATTGATAGATTCAACGGACGGCAACACGGCGGAGAAGGATGCAAGACCAAACCTGTCGATTGAAGGTTATGAAGTTATTGACGAAATAAAAGCCAAATTAGAAGAAGAGTGTCCCGATATCGTCTCGTGTGCTGATATAGTTGCTTTGGCAGCCAGAGATGCTGTTTCTTACCAATTTGGCAGGTCCATGTGGCAGGTTTTCGGAGGGAGGAAAGATGGAAGAGTTTCACTTGCCACGGAGGCTGCAAGGGACTTGCCTTCCGGAGGTGCAAACTACACCACACTCCAAGACCAATTTGCTGGTTTAGGGCTAAACTACATAGATCTTGTTGCCTTATCAGGGGCGCATACCATCGGAGTAGCACATTGCGTAGTATTTGCAAGGAGACTGAACTTCACAGGAAAAGGGGACATAGACCCCTCACTTGATCCAGCATATGCAGAGTTCTTGAAAACACACTGCCCCAGCAGACCTAATCCGGCTACCACCGTAGAGCTTGACGAAAATAGCTCACTTTCTTTCGACAGCAACTACTATGTGGGTCTGAGGCAGAACAAAGGCCTGCTCGGATCAGATGCTGCCCTGCTCACTGACCGGCGGGCGGCTTGGGTTGCAAGAAGATTCCAAAATTTCCATGTCTTCATGGCTCGCTTTGGTAAGTCAATGATGAAAATGGGTGACATTGGAATCAAAACAGGAGATGATGGAGAAATTAGGAAGAATTGCAGAGTTATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0070696 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KAP U-box

Protein Analysis

323

Amino Acids

35.31

Weight (kDa)

7.55

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 286	1.6e-77	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24330 AT1G24330 AT1G27910 AT1G67530 AT1G67530 AT1G67530 AT1G67530
fragaria_vesca	FvH4_4g24030 FvH4_4g24030 FvH4_4g24030
malus_domestica	MD16G1116600.v1.1
prunus_persica	Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1 Prupe.1G229500_v2.0.a1
pyrus_communis	pycom13g10100 pycom16g09990
rosa_chinensis	RchiOBHm_Chr4g0430741 RchiOBHm_Chr7g0222371 RchiOBHm_Chr7g0222381
rosa_laevigata	RLG00000002065 RLG00000002066 RLG00000006953
rosa_multiflora	Rmu_co8254499.1_g000001 Rmu_sc0008769.1_g000015 Rmu_sc0030350.1_g000001 Rmu_sc0034402.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237030 Rroxscaffold_5G00372450
rosa_rugosa	Rorug04G0245300 Rorug04G0245300 Rorug04G0245400 Rorug04G0245500 Rorug07G0207800
rosa_samantha	Rh4AG301500 Rh4BG309400 Rh4CG326100 Rh4DG306400 Rh7AG350300 Rh7BG340600 Rh7BG340700 Rh7CG367800 Rh7DG346500 Rh7DG346600
rosa_wichuraiana	Rw4G026200 Rw7G029570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	402, 415
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	5 cut(s)	94, 107, 260, 829, 833
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	2 cut(s)	653, 808
AcsI	RAATTY	1 cut(s)	859
AfiI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
AgsI	TTSAA	3 cut(s)	243, 293, 682
AjnI	CCWGG	2 cut(s)	137, 210
AluBI	AGCT	6 cut(s)	50, 76, 173, 178, 727, 741
AluI	AGCT	6 cut(s)	50, 76, 173, 178, 727, 741
Alw26I	GTCTC	2 cut(s)	358, 610
AlwI	GGATC	2 cut(s)	653, 808
AlwNI	CAGNNNCTG	1 cut(s)	809
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	6 cut(s)	152, 170, 187, 380, 473, 809
ApoI	RAATTY	1 cut(s)	859
AseI	ATTAAT	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	920
AvaII	GGWCC	1 cut(s)	414
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	862
BbvI	GCAGC	6 cut(s)	164, 174, 182, 392, 460, 796
BccI	CCATC	3 cut(s)	440, 590, 929
BceAI	ACGGC	3 cut(s)	200, 265, 273
BciT130I	CCWGG	2 cut(s)	139, 212
BcoDI	GTCTC	2 cut(s)	358, 610
BfuAI	ACCTGC	2 cut(s)	402, 415
BglI	GCCNNNNNGGC	1 cut(s)	470
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	7 cut(s)	153, 171, 188, 381, 474, 810, 834
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	7 cut(s)	154, 172, 189, 382, 475, 811, 835
Bme1390I	CCNGG	2 cut(s)	139, 212
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	139, 212
BmsI	GCATC	5 cut(s)	211, 233, 259, 379, 796
BpiI	GAAGAC	1 cut(s)	862
BpmI	CTGGAG	1 cut(s)	160
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	211, 465
BsaWI	WCCGGW	2 cut(s)	82, 491
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
Bse118I	RCCGGY	1 cut(s)	825
Bse3DI	GCAATG	1 cut(s)	595
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	139, 212
BseDI	CCNNGG	2 cut(s)	211, 465
BseGI	GGATG	2 cut(s)	221, 274
BseLI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	68, 767
BseXI	GCAGC	6 cut(s)	164, 174, 182, 392, 460, 796
BseYI	CCCAGC	1 cut(s)	695
BshFI	GGCC	1 cut(s)	792
BsiSI	CCGG	4 cut(s)	83, 492, 710, 826
BslFI	GGGAC	3 cut(s)	327, 494, 653
BslI	CCNNNNNNNGG	4 cut(s)	113, 494, 570, 832
BsmAI	GTCTC	2 cut(s)	358, 610
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	3 cut(s)	327, 494, 653
BsnI	GGCC	1 cut(s)	792
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	553, 658, 800
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	5 cut(s)	94, 107, 260, 829, 833
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	2 cut(s)	69, 768
BspEI	TCCGGA	1 cut(s)	491
BspMI	ACCTGC	2 cut(s)	402, 415
BspPI	GGATC	2 cut(s)	653, 808
BsrDI	GCAATG	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	825
BssAI	RCCGGY	1 cut(s)	825
BssECI	CCNNGG	2 cut(s)	211, 465
BssMI	GATC	3 cut(s)	553, 658, 800
BssSI	CACGAG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	139, 212
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	3 cut(s)	39, 330, 445
BstAPI	GCANNNNNTGC	2 cut(s)	102, 161
BstC8I	GCNNGC	4 cut(s)	107, 794, 831, 880
BstDEI	CTNAG	3 cut(s)	77, 174, 776
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	221, 274
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	3 cut(s)	556, 661, 803
BstMAI	GTCTC	2 cut(s)	358, 610
BstMBI	GATC	3 cut(s)	553, 658, 800
BstMWI	GCNNNNNNNGC	8 cut(s)	102, 161, 170, 184, 380, 389, 470, 842
BstNI	CCWGG	2 cut(s)	139, 212
BstSCI	CCNGG	2 cut(s)	137, 210
BstV1I	GCAGC	6 cut(s)	164, 174, 182, 392, 460, 796
BstV2I	GAAGAC	1 cut(s)	862
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	221, 274
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	2 cut(s)	688, 819
BveI	ACCTGC	2 cut(s)	402, 415
Cac8I	GCNNGC	4 cut(s)	107, 794, 831, 880
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	825
Cfr13I	GGNCC	1 cut(s)	414
CviAII	CATG	4 cut(s)	197, 418, 866, 874
DdeI	CTNAG	3 cut(s)	77, 174, 776
DpnI	GATC	3 cut(s)	555, 660, 802
DpnII	GATC	3 cut(s)	553, 658, 800
Eam1104I	CTCTTC	3 cut(s)	39, 330, 445
EarI	CTCTTC	3 cut(s)	39, 330, 445
EciI	GGCGGA	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	792
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	137, 210
EcoRV	GATATC	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	4 cut(s)	200, 421, 869, 877
FaqI	GGGAC	3 cut(s)	327, 494, 653
FatI	CATG	4 cut(s)	196, 417, 865, 873
FauI	CCCGC	2 cut(s)	114, 822
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	7 cut(s)	153, 171, 188, 381, 474, 810, 834
FokI	GGATG	2 cut(s)	228, 281
Fsp4HI	GCNGC	7 cut(s)	153, 171, 188, 381, 474, 810, 834
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	7 cut(s)	153, 171, 188, 381, 474, 810, 834
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	4 cut(s)	83, 492, 710, 826
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	4 cut(s)	200, 421, 869, 877
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	79, 239, 852, 918
HpaII	CCGG	4 cut(s)	83, 492, 710, 826
HphI	GGTGA	1 cut(s)	920
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	5 cut(s)	434, 587, 777, 800, 805
Hpy188III	TCNNGA	3 cut(s)	344, 492, 679
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	175, 259, 287, 498
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	12, 18
HpyF10VI	GCNNNNNNNGC	8 cut(s)	102, 161, 170, 184, 380, 389, 470, 842
HpyF3I	CTNAG	3 cut(s)	77, 174, 776
HpySE526I	ACGT	2 cut(s)	12, 18
Hsp92II	CATG	4 cut(s)	200, 421, 869, 877
HspAI	GCGC	1 cut(s)	575
Kpn2I	TCCGGA	1 cut(s)	491
Kzo9I	GATC	3 cut(s)	553, 658, 800
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	6 cut(s)	164, 174, 182, 392, 460, 796
LweI	GCATC	5 cut(s)	211, 233, 259, 379, 796
MaeII	ACGT	2 cut(s)	12, 18
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	3 cut(s)	555, 660, 802
MboI	GATC	3 cut(s)	553, 658, 800
MboII	GAAGA	8 cut(s)	26, 129, 344, 347, 462, 861, 862, 961
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	7 cut(s)	326, 404, 524, 859, 942, 952, 967
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	62, 120, 428, 432, 463, 488, 661, 771
Mph1103I	ATGCAT	1 cut(s)	226
MroI	TCCGGA	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	454
MseI	TTAA	2 cut(s)	966, 970
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	4 cut(s)	83, 492, 710, 826
MspR9I	CCNGG	2 cut(s)	139, 212
MvaI	CCWGG	2 cut(s)	139, 212
MwoI	GCNNNNNNNGC	8 cut(s)	102, 161, 170, 184, 380, 389, 470, 842
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	3 cut(s)	553, 658, 800
NlaIII	CATG	4 cut(s)	200, 421, 869, 877
NmuCI	GTSAC	1 cut(s)	908
NsiI	ATGCAT	1 cut(s)	226
PacI	TTAATTAA	1 cut(s)	970
PceI	AGGCCT	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	3 cut(s)	239, 852, 918
PkrI	GCNGC	7 cut(s)	154, 172, 189, 382, 475, 811, 835
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	966
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	137, 210
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	2 cut(s)	137, 210
PspPI	GGNCC	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	966, 970
SatI	GCNGC	7 cut(s)	153, 171, 188, 381, 474, 810, 834
Sau3AI	GATC	3 cut(s)	553, 658, 800
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	139, 212
SfaNI	GCATC	5 cut(s)	211, 233, 259, 379, 796
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	7 cut(s)	326, 404, 524, 859, 942, 952, 967
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	5 cut(s)	94, 107, 260, 829, 833
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	137, 210
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	15, 21
TaqI	TCGA	2 cut(s)	287, 753
TasI	AATT	7 cut(s)	326, 404, 524, 859, 942, 952, 967
TauI	GCSGC	1 cut(s)	836
TfiI	GAWTC	3 cut(s)	239, 852, 918
Tru1I	TTAA	2 cut(s)	966, 970
Tru9I	TTAA	2 cut(s)	966, 970
TscAI	CASTG	2 cut(s)	695, 826
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	6 cut(s)	152, 170, 187, 380, 473, 809
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	3 cut(s)	315, 862, 914
TspGWI	ACGGA	2 cut(s)	260, 482
TspRI	CASTG	2 cut(s)	695, 826
VpaK11BI	GGWCC	1 cut(s)	414
VspI	ATTAAT	1 cut(s)	966
XagI	CCTNNNNNAGG	1 cut(s)	492
XapI	RAATTY	1 cut(s)	859
XmnI	GAANNNNTTC	1 cut(s)	454
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.